AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
    • AAI clade 11-1 medoid: Streptomyces tanashiensis GCF 014648895 1
    • AAI clade 11-2 medoid: Kribbella sindirgiensis GCF 004331435 1
    • AAI clade 11-3 medoid: Corynebacterium lehmanniae GCF 027570055 1
    • AAI clade 11-4 medoid: Streptomyces sabulosicollis GCF 016103465 1
    • AAI clade 11-5 medoid: Streptomyces tricolor GCF 002155905 1
    • AAI clade 11-6 medoid: Nocardiopsis dassonvillei GCF 900638215 1
    • AAI clade 11-7 medoid: Nonomuraea jabiensis GCF 014204795 1
    • AAI clade 11-8 medoid: Nocardioides pinisoli GCF 024199985 1
      • AAI clade 11-8-1 medoid: Nocardioides pinisoli GCF 024199985 1
      • AAI clade 11-8-2 medoid: Nocardioides albus GCF 014191915 1
      • AAI clade 11-8-3 medoid: Aeromicrobium duanguangcaii GCF 021228355 1
      • AAI clade 11-8-4 medoid: Aeromicrobium chenweiae GCF 003065605 1
      • AAI clade 11-8-5 medoid: Mumia quercus GCF 025506335 1
      • AAI clade 11-8-6 medoid: Nocardioides jishulii GCF 006007965 1
      • AAI clade 11-8-7 medoid: Nocardioides abyssi GCF 030412915 1
        • AAI clade 11-8-7-1 medoid: Nocardioides deserti GCF 014266025 1
        • AAI clade 11-8-7-2 medoid: Nocardioides dongkuii GCF 014127485 1
        • AAI clade 11-8-7-3 medoid: Nocardioides massiliensis GCF 030811215 1
        • AAI clade 11-8-7-4 medoid: Nocardioides szechwanensis GCF 007992395 1
        • AAI clade 11-8-7-5 medoid: Nocardioides marinus GCF 013408145 1
        • AAI clade 11-8-7-6 medoid: Nocardioides islandensis GCF 015352455 1
        • AAI clade 11-8-7-7 medoid: Nocardioides daejeonensis GCF 003194585 1
        • AAI clade 11-8-7-8 medoid: Nocardioides alkalitolerans DSM 16699 GCF 000426525 1
        • AAI clade 11-8-7-9 medoid: Nocardioides anomalus GCF 011046535 1
        • AAI clade 11-8-7-10 medoid: Nocardioides caldifontis GCF 008087345 1
        • AAI clade 11-8-7-11 medoid: Nocardioides coralli GCF 019880385 1
        • AAI clade 11-8-7-12 medoid: Nocardioides cynanchi GCF 008761635 1
          1 dataset: Nocardioides cynanchi GCF 008761635 1 (AAI: 100.0%)
        • AAI clade 11-8-7-13 medoid: Nocardioides daedukensis GCF 013408415 1
        • AAI clade 11-8-7-14 medoid: Nocardioides guangzhouensis GCF 004519545 1
        • AAI clade 11-8-7-15 medoid: Nocardioides ginsengisegetis GCF 014138045 1
        • AAI clade 11-8-7-16 medoid: Nocardioides insulae DSM 17944 GCF 000422825 1
        • AAI clade 11-8-7-17 medoid: Nocardioides jiangsuensis GCF 019679455 1
        • AAI clade 11-8-7-18 medoid: Nocardioides rubriscoriae GCF 008087085 1
        • AAI clade 11-8-7-19 medoid: Nocardioides mangrovicus GCF 003674065 1
        • AAI clade 11-8-7-20 medoid: Nocardioides mangrovi GCF 020073815 1
        • AAI clade 11-8-7-21 medoid: Nocardioides marmoribigeumensis GCF 031458325 1
        • AAI clade 11-8-7-22 medoid: Nocardioides marmoriginsengisoli GCF 003725695 1
        • AAI clade 11-8-7-23 medoid: Nocardioides perillae GCF 013409425 1
        • AAI clade 11-8-7-24 medoid: Nocardioides rotundus GCF 019931675 1
        • AAI clade 11-8-7-25 medoid: Nocardioides terrae GCF 900112345 1
        • AAI clade 11-8-7-26 medoid: Nocardioides limicola GCF 016827675 1
      • AAI clade 11-8-8 medoid: Nocardioides nitrophenolicus GCF 016907515 1
      • AAI clade 11-8-9 medoid: Propionibacterium australiense GCF 003666605 1
      • AAI clade 11-8-10 medoid: Nocardioides antri GCF 008373765 1
      • AAI clade 11-8-11 medoid: Nocardioides jejuensis GCF 004337475 1
    • AAI clade 11-9 medoid: Actinomadura citrea GCF 013409045 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1