AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
    • AAI clade 11-1 medoid: Streptomyces tanashiensis GCF 014648895 1
    • AAI clade 11-2 medoid: Kribbella sindirgiensis GCF 004331435 1
    • AAI clade 11-3 medoid: Corynebacterium lehmanniae GCF 027570055 1
    • AAI clade 11-4 medoid: Streptomyces sabulosicollis GCF 016103465 1
    • AAI clade 11-5 medoid: Streptomyces tricolor GCF 002155905 1
    • AAI clade 11-6 medoid: Nocardiopsis dassonvillei GCF 900638215 1
      • AAI clade 11-6-1 medoid: Nocardiopsis alborubida NBRC 13392 GCF 001552695 1
      • AAI clade 11-6-2 medoid: Nocardiopsis exhalans GCF 024134545 1
      • AAI clade 11-6-3 medoid: Nocardiopsis sinuspersici GCF 001998325 1
      • AAI clade 11-6-4 medoid: Nocardiopsis suaedae GCF 027706745 1
      • AAI clade 11-6-5 medoid: Nocardiopsis gilva YIM 90087 GCF 000341165 1
      • AAI clade 11-6-6 medoid: Nocardiopsis kunsanensis DSM 44524 GCF 000340965 1
      • AAI clade 11-6-7 medoid: Streptomonospora mangrovi GCF 027604915 1
        2 datasets: Streptomonospora nanhaiensis GCF 013410565 1 (AAI: 92.02%) and Streptomonospora mangrovi GCF 027604915 1 (AAI: 100.0%)
      • AAI clade 11-6-8 medoid: Thermobifida alba GCF 023208015 1
      • AAI clade 11-6-9 medoid: Marinactinospora thermotolerans DSM 45154 GCF 900167435 1
      • AAI clade 11-6-10 medoid: Alienimonas chondri GCF 013036045 1
      • AAI clade 11-6-11 medoid: Allonocardiopsis opalescens GCF 003002095 1
      • AAI clade 11-6-12 medoid: Allosalinactinospora lopnorensis GCF 000981225 1
      • AAI clade 11-6-13 medoid: Haloactinospora alba GCF 006717075 1
      • AAI clade 11-6-14 medoid: Lipingzhangella rawalii GCF 031628175 1
      • AAI clade 11-6-15 medoid: Murinocardiopsis flavida GCF 003014485 1
      • AAI clade 11-6-16 medoid: Nocardiopsis changdeensis GCF 018316655 1
      • AAI clade 11-6-17 medoid: Nocardiopsis composta GCF 014200805 1
      • AAI clade 11-6-18 medoid: Nocardiopsis salina YIM 90010 GCF 000341025 1
      • AAI clade 11-6-19 medoid: Nocardiopsis trehalosi NBRC 14201 GCF 001552555 1
      • AAI clade 11-6-20 medoid: Patulibacter americanus DSM 16676 GCF 000420025 1
      • AAI clade 11-6-21 medoid: Solirubrobacter soli DSM 22325 GCF 000423665 1
      • AAI clade 11-6-22 medoid: Spiractinospora alimapuensis GCF 018437505 1
      • AAI clade 11-6-23 medoid: Streptomonospora alba GCF 000826685 1
    • AAI clade 11-7 medoid: Nonomuraea jabiensis GCF 014204795 1
    • AAI clade 11-8 medoid: Nocardioides pinisoli GCF 024199985 1
    • AAI clade 11-9 medoid: Actinomadura citrea GCF 013409045 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1