AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
-
AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
-
AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
-
AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
-
AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
-
AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
-
AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
-
AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
-
AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
-
AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
-
AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
-
AAI clade 11-1
medoid: Streptomyces tanashiensis GCF 014648895 1
-
AAI clade 11-2
medoid: Kribbella sindirgiensis GCF 004331435 1
-
AAI clade 11-3
medoid: Corynebacterium lehmanniae GCF 027570055 1
-
AAI clade 11-3-1
medoid: Corynebacterium ramonii FRC0011 GCF 949127625 1
-
AAI clade 11-3-2
medoid: Corynebacterium lehmanniae GCF 027570055 1
-
AAI clade 11-3-3
medoid: Corynebacterium jeikeium GCF 001999385 1
-
AAI clade 11-3-4
medoid: Corynebacterium lizhenjunii GCF 011038655 2
-
AAI clade 11-3-5
medoid: Speluncibacter jeojiensis GCF 029589495 1
-
AAI clade 11-3-6
medoid: Corynebacterium pilosum DSM 20521 GCF 000373805 1
-
AAI clade 11-3-7
medoid: Corynebacterium meitnerae GCF 027570075 1
6 datasets: Corynebacterium appendicis CIP 107643 GCF 030408415 1 (AAI: 70.46%), Corynebacterium aquatimens GCF 015752125 1 (AAI: 65.36%), Corynebacterium genitalium ATCC 33030 GCF 000143825 1 (AAI: 69.61%), Corynebacterium meitnerae GCF 027570075 1 (AAI: 100.0%), Corynebacterium tuscaniense GCF 008693065 1 (AAI: 84.92%), and Corynebacterium urinipleomorphum GCF 900155535 1 (AAI: 70.78%)
-
AAI clade 11-3-8
medoid: Corynebacterium timonense 5401744 GCF 000312345 1
-
AAI clade 11-3-9
medoid: Corynebacterium lowii GCF 001412085 1
-
AAI clade 11-3-10
medoid: Corynebacterium tapiri GCF 006334925 1
-
AAI clade 11-3-11
medoid: Corynebacterium suedekumii GCF 030252185 1
-
AAI clade 11-3-12
medoid: Corynebacterium pseudopelargi GCF 003814005 1
-
AAI clade 11-3-13
medoid: Corynebacterium propinquum DSM 44285 GCF 000375525 1
-
AAI clade 11-3-14
medoid: Nocardia elegans NBRC 108235 GCF 001612845 1
-
AAI clade 11-3-15
medoid: Corynebacterium urogenitale GCF 009026825 1
-
AAI clade 11-3-16
medoid: Corynebacterium aquilae DSM 44791 GCF 001941445 1
-
AAI clade 11-3-17
medoid: Corynebacterium frankenforstense DSM 45800 GCF 001941485 1
-
AAI clade 11-3-18
medoid: Corynebacterium sanguinis GCF 007641235 1
-
AAI clade 11-3-19
medoid: Corynebacterium ulceribovis DSM 45146 GCF 000372445 1
-
AAI clade 11-3-1
medoid: Corynebacterium ramonii FRC0011 GCF 949127625 1
-
AAI clade 11-4
medoid: Streptomyces sabulosicollis GCF 016103465 1
-
AAI clade 11-5
medoid: Streptomyces tricolor GCF 002155905 1
-
AAI clade 11-6
medoid: Nocardiopsis dassonvillei GCF 900638215 1
-
AAI clade 11-7
medoid: Nonomuraea jabiensis GCF 014204795 1
-
AAI clade 11-8
medoid: Nocardioides pinisoli GCF 024199985 1
-
AAI clade 11-9
medoid: Actinomadura citrea GCF 013409045 1
-
AAI clade 11-1
medoid: Streptomyces tanashiensis GCF 014648895 1
-
AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
-
AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
-
AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
-
AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
-
AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
-
AAI clade 17
medoid: Dorea hominis GCF 014287705 1
-
AAI clade 18
medoid: Massilia putida GCF 001941825 1
-
AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
-
AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
-
AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
-
AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
-
AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
-
AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
-
AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
-
AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
-
AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
-
AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
-
AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
-
AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
-
AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
-
AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
-
AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
-
AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1