ANI-based medoid clustering
The ANI clusters provide a high resolution view of the below-species structure of the datasets and facilitate genome-based typing.
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ANI clade 1
medoid: uncultured Rothia sp. GCA 946222235 1
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ANI clade 2
medoid: Rothia mucilaginosa GCA 004799365 1
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ANI clade 3
medoid: Rothia aeria GCA 905370405 1
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ANI clade 4
medoid: Rothia sp. ND6WE1A GCA 001683935 1
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ANI clade 5
medoid: Rothia mucilaginosa GCA 001065135 1
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ANI clade 6
medoid: Rothia sp. P100 GCA 023712425 1
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ANI clade 7
medoid: Rothia sp. ZJ932 GCA 016924835 1
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ANI clade 8
medoid: uncultured Rothia sp. GCA 902373285 1
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ANI clade 9
medoid: uncultured Rothia sp. GCA 902461355 1
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ANI clade 10
medoid: Rothia nasimurium GCA 928382285 1
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ANI clade 10-1
medoid: Candidatus Rothia avicola GCA 019115985 1
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ANI clade 10-2
medoid: Candidatus Rothia avistercoris GCA 019120655 1
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ANI clade 10-3
medoid: Rothia nasimurium GCA 928392785 1
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ANI clade 10-4
medoid: Rothia nasimurium GCA 928381905 1
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ANI clade 10-5
medoid: Rothia nasimurium GCA 928381705 1
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ANI clade 10-6
medoid: Rothia nasimurium GCA 928381435 1
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ANI clade 10-7
medoid: Rothia nasimurium GCA 928392795 1
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ANI clade 10-8
medoid: Rothia nasimurium GCA 928381465 1
2 datasets: Rothia nasimurium GCA 928382245 1 (ANI: 99.98%) and Rothia nasimurium GCA 928381465 1 (ANI: 100.0%)
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ANI clade 10-9
medoid: Rothia nasimurium GCA 928381455 1
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ANI clade 10-10
medoid: Rothia nasimurium GCA 015235405 1
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ANI clade 10-11
medoid: Rothia nasimurium GCA 928392065 1
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ANI clade 10-12
medoid: Rothia nasimurium GCA 928381425 1
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ANI clade 10-13
medoid: Rothia nasimurium GCA 928381415 1
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ANI clade 10-14
medoid: Rothia sp. SD9660Na GCA 030064065 1
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ANI clade 10-1
medoid: Candidatus Rothia avicola GCA 019115985 1
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ANI clade 11
medoid: Rothia nasisuis GCA 928392685 1
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ANI clade 12
medoid: Rothia nasimurium GCA 928391935 1
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ANI clade 13
medoid: Rothia koreensis GCA 004136575 1
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ANI clade 14
medoid: Rothia kristinae GCA 025150355 1