AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: Brucella daejeonensis GCA 014199265 1
-
AAI clade 2
medoid: GCA 017448355 1
-
AAI clade 3
medoid: GCA 017467885 1
-
AAI clade 4
medoid: Pedobacter duraquae GCA 004362245 1
-
AAI clade 5
medoid: Streptomyces angustmyceticus GCA 002154415 1
-
AAI clade 6
medoid: Pseudomonas migulae GCA 024169545 1
-
AAI clade 7
medoid: miga SS18A Bin 41 contigs
-
AAI clade 8
medoid: Mucilaginibacter ginkgonis GCA 009754905 2
-
AAI clade 9
medoid: GCA 900755995 1
-
AAI clade 10
medoid: GCF 013113835 1
-
AAI clade 11
medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
-
AAI clade 12
medoid: GCA 016840965 1
-
AAI clade 13
medoid: GCA 017622235 1
-
AAI clade 14
medoid: GCA 904390925 1
-
AAI clade 15
medoid: GCA 002375985 1
-
AAI clade 16
medoid: GCA 003963015 1
-
AAI clade 17
medoid: GCA 001771585 1
-
AAI clade 18
medoid: GCF 018398895 1
-
AAI clade 19
medoid: GCA 001295775 1
-
AAI clade 20
medoid: Qipengyuania aquimaris GCA 009827445 1
-
AAI clade 21
medoid: GCF 009363535 1
-
AAI clade 22
medoid: GCA 904374795 1
-
AAI clade 23
medoid: GCA 903955385 1
-
AAI clade 24
medoid: GCA 903887975 1
-
AAI clade 25
medoid: GCA 902602655 1
-
AAI clade 26
medoid: GCA 905235755 1
-
AAI clade 27
medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
-
AAI clade 28
medoid: GCA 903909555 1
-
AAI clade 29
medoid: Marinomonas aquimarina GCA 900089755 1
-
AAI clade 30
medoid: GCA 015061955 1
-
AAI clade 31
medoid: GCA 000421065 1
-
AAI clade 32
medoid: GCA 002438845 1
-
AAI clade 33
medoid: GCA 003602665 1
-
AAI clade 34
medoid: GCA 910585295 1
-
AAI clade 35
medoid: Nocardioides iriomotensis GCA 004168035 1
-
AAI clade 36
medoid: GCA 017608235 1
-
AAI clade 37
medoid: GCF 004332155 1
-
AAI clade 38
medoid: GCA 009712635 1
-
AAI clade 39
medoid: GCA 903926605 1
-
AAI clade 40
medoid: GCA 017645955 1
-
AAI clade 41
medoid: GCA 016793015 1
-
AAI clade 42
medoid: GCA 900538305 1
-
AAI clade 43
medoid: GCA 001002765 1
-
AAI clade 44
medoid: GCA 902559935 1
-
AAI clade 45
medoid: GCA 011371455 1
-
AAI clade 46
medoid: GCA 000435515 1
-
AAI clade 47
medoid: Anaerostipes butyraticus GCA 016586355 1
-
AAI clade 48
medoid: GCF 002835935 1
-
AAI clade 49
medoid: miga PS19A RaymondF 2016 P20E90 bin 24
-
AAI clade 50
medoid: GCA 002338255 1
-
AAI clade 51
medoid: Haloprofundus salinisoli GCA 020097815 1
-
AAI clade 52
medoid: GCA 900167925 1
-
AAI clade 53
medoid: GCA 900550065 1
-
AAI clade 54
medoid: GCA 002314915 1
-
AAI clade 55
medoid: Rhizorhabdus dicambivorans GCA 002355275 1
-
AAI clade 56
medoid: GCA 005882335 1
-
AAI clade 57
medoid: GCA 011065225 1
-
AAI clade 58
medoid: GCA 016781775 1
-
AAI clade 59
medoid: GCA 002362595 1
-
AAI clade 60
medoid: GCA 016214555 1
-
AAI clade 61
medoid: GCF 014764505 1
-
AAI clade 62
medoid: GCA 902623215 1
-
AAI clade 63
medoid: GCA 003514205 1
-
AAI clade 64
medoid: GCF 009707955 1
-
AAI clade 65
medoid: GCF 000348745 1
-
AAI clade 66
medoid: GCA 900772425 1
-
AAI clade 67
medoid: GCF 003590645 1
-
AAI clade 68
medoid: GCF 902506105 1
-
AAI clade 69
medoid: GCF 013407275 1
-
AAI clade 70
medoid: GCA 015494795 1
-
AAI clade 71
medoid: GCA 016709995 1
-
AAI clade 72
medoid: GCA 002493965 1
-
AAI clade 73
medoid: GCA 009469665 1
-
AAI clade 73-1
medoid: GCF 002217795 2
-
AAI clade 73-2
medoid: Morococcus cerebrosus GCA 000813705 1
-
AAI clade 73-3
medoid: GCF 900103165 1
-
AAI clade 73-4
medoid: GCA 016709335 1
-
AAI clade 73-5
medoid: Nitrosomonas communis GCA 001007935 1
-
AAI clade 73-6
medoid: Sulfuricella denitrificans skB26 GCA 000297055 2
-
AAI clade 73-7
medoid: Deefgea piscis GCA 013284055 1
-
AAI clade 73-8
medoid: GCA 017983615 1
-
AAI clade 73-8-1
medoid: Azonexus hydrophilus DSM 23864 GCA 000429605 1
-
AAI clade 73-8-2
medoid: Azospira restricta GCA 016858125 1
-
AAI clade 73-8-3
medoid: Azovibrio restrictus DSM 23866 GCA 000429665 1
-
AAI clade 73-8-4
medoid: Fluviibacter phosphoraccumulans GCA 016110345 1
-
AAI clade 73-8-5
medoid: Azospira inquinata GCA 018905915 1
-
AAI clade 73-8-6
medoid: Acidithiobacillus sulfuriphilus GCA 003721225 1
-
AAI clade 73-8-7
medoid: GCF 003112695 1
-
AAI clade 73-8-8
medoid: Dechloromonas agitata GCA 028864255 1
-
AAI clade 73-8-9
medoid: Dechloromonas hortensis GCA 009469765 1
-
AAI clade 73-8-10
medoid: Oryzomicrobium terrae GCA 008274805 1
-
AAI clade 73-8-11
medoid: Oxalobacter formigenes GCA 027158485 1
-
AAI clade 73-8-12
medoid: GCA 002170285 1
-
AAI clade 73-8-13
medoid: GCA 002337055 1
-
AAI clade 73-8-14
medoid: GCA 002840765 1
-
AAI clade 73-8-15
medoid: GCA 017302355 1
-
AAI clade 73-8-16
medoid: GCA 002440665 1
-
AAI clade 73-8-17
medoid: GCA 002747975 1
-
AAI clade 73-8-18
medoid: GCA 018828385 1
-
AAI clade 73-8-19
medoid: GCA 003158255 1
-
AAI clade 73-8-20
medoid: GCA 003488465 1
-
AAI clade 73-8-21
medoid: GCA 004555545 1
-
AAI clade 73-8-22
medoid: GCA 016720065 1
-
AAI clade 73-8-23
medoid: GCA 009777245 1
-
AAI clade 73-8-24
medoid: GCA 009777925 1
-
AAI clade 73-8-25
medoid: GCA 009779265 1
-
AAI clade 73-8-26
medoid: GCA 009780885 1
-
AAI clade 73-8-27
medoid: GCA 009923755 1
-
AAI clade 73-8-28
medoid: GCA 016709495 1
-
AAI clade 73-8-29
medoid: GCA 011525985 1
1 dataset: GCA 011525985 1 (AAI: 100.0%)
-
AAI clade 73-8-30
medoid: GCA 017983615 1
-
AAI clade 73-8-31
medoid: GCA 013139875 1
-
AAI clade 73-8-32
medoid: GCA 016790845 1
-
AAI clade 73-8-33
medoid: GCA 014377305 1
-
AAI clade 73-8-34
medoid: GCA 016710885 1
-
AAI clade 73-8-35
medoid: GCA 016721185 1
-
AAI clade 73-8-36
medoid: GCA 016793525 1
-
AAI clade 73-8-37
medoid: GCA 016861105 1
-
AAI clade 73-8-38
medoid: GCA 018261935 1
-
AAI clade 73-8-39
medoid: GCA 018262285 1
-
AAI clade 73-8-40
medoid: GCA 018262875 1
-
AAI clade 73-8-41
medoid: GCA 018608565 1
-
AAI clade 73-8-42
medoid: GCA 018883385 1
-
AAI clade 73-8-43
medoid: GCF 905120355 1
-
AAI clade 73-8-44
medoid: GCA 900552915 1
-
AAI clade 73-8-45
medoid: GCA 905215795 1
-
AAI clade 73-8-46
medoid: GCA 905339345 1
-
AAI clade 73-8-47
medoid: asm GCA 001828925 1
-
AAI clade 73-8-48
medoid: asm GCA 003647135 1
-
AAI clade 73-8-49
medoid: asm GCA 003820055 1
-
AAI clade 73-8-50
medoid: gb PMDV00000000
-
AAI clade 73-8-51
medoid: miga PS19A DavidLA 2015 LD Run2 08 bin 6
-
AAI clade 73-8-52
medoid: miga PS19A LiJ 2014 DLM006 IE bin 17
-
AAI clade 73-8-53
medoid: miga PS19A OhJ 2014 MET0207 megahit bin 12
-
AAI clade 73-8-1
medoid: Azonexus hydrophilus DSM 23864 GCA 000429605 1
-
AAI clade 73-9
medoid: GCA 016183575 1
-
AAI clade 73-10
medoid: GCA 016709665 1
-
AAI clade 73-11
medoid: GCA 017592775 1
-
AAI clade 73-12
medoid: GCA 007280315 1
-
AAI clade 73-1
medoid: GCF 002217795 2
-
AAI clade 74
medoid: GCA 001799635 1
-
AAI clade 75
medoid: GCA 016650235 1
-
AAI clade 76
medoid: Ochrovirga pacifica GCA 000220525 2
-
AAI clade 77
medoid: GCA 009903855 1
-
AAI clade 78
medoid: GCA 019204045 1
-
AAI clade 79
medoid: GCA 902783375 1
-
AAI clade 80
medoid: GCF 000350105 1
-
AAI clade 81
medoid: GCA 903901345 1
-
AAI clade 82
medoid: GCA 015075425 1
-
AAI clade 83
medoid: GCA 001508835 1
-
AAI clade 84
medoid: GCA 017746715 1
-
AAI clade 85
medoid: Nocardioides plantarum GCA 006346395 1
-
AAI clade 86
medoid: GCA 017438285 1
-
AAI clade 87
medoid: GCA 002712945 1
-
AAI clade 88
medoid: GCF 002214625 1
-
AAI clade 89
medoid: GCA 902773215 1
-
AAI clade 90
medoid: GCA 002723385 1
-
AAI clade 91
medoid: GCA 019113455 1
-
AAI clade 92
medoid: GCA 016286935 1
-
AAI clade 93
medoid: GCA 003566775 1