AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Brucella daejeonensis GCA 014199265 1
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AAI clade 2
medoid: GCA 017448355 1
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AAI clade 3
medoid: GCA 017467885 1
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AAI clade 4
medoid: Pedobacter duraquae GCA 004362245 1
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AAI clade 5
medoid: Streptomyces angustmyceticus GCA 002154415 1
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AAI clade 6
medoid: Pseudomonas migulae GCA 024169545 1
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AAI clade 7
medoid: miga SS18A Bin 41 contigs
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AAI clade 8
medoid: Mucilaginibacter ginkgonis GCA 009754905 2
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AAI clade 9
medoid: GCA 900755995 1
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AAI clade 10
medoid: GCF 013113835 1
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AAI clade 11
medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
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AAI clade 12
medoid: GCA 016840965 1
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AAI clade 13
medoid: GCA 017622235 1
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AAI clade 14
medoid: GCA 904390925 1
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AAI clade 15
medoid: GCA 002375985 1
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AAI clade 16
medoid: GCA 003963015 1
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AAI clade 17
medoid: GCA 001771585 1
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AAI clade 18
medoid: GCF 018398895 1
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AAI clade 19
medoid: GCA 001295775 1
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AAI clade 20
medoid: Qipengyuania aquimaris GCA 009827445 1
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AAI clade 21
medoid: GCF 009363535 1
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AAI clade 22
medoid: GCA 904374795 1
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AAI clade 23
medoid: GCA 903955385 1
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AAI clade 24
medoid: GCA 903887975 1
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AAI clade 25
medoid: GCA 902602655 1
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AAI clade 26
medoid: GCA 905235755 1
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AAI clade 27
medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
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AAI clade 28
medoid: GCA 903909555 1
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AAI clade 29
medoid: Marinomonas aquimarina GCA 900089755 1
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AAI clade 29-1
medoid: GCF 000219565 1
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AAI clade 29-2
medoid: GCA 003250495 1
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AAI clade 29-2-1
medoid: GCA 003250495 1
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AAI clade 29-2-1-1
medoid: GCA 016744155 1
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AAI clade 29-2-1-2
medoid: GCA 001644975 1
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AAI clade 29-2-1-3
medoid: Francisella tularensis subsp. novicida U112 GCA 000833375 1
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AAI clade 29-2-1-4
medoid: Alloalcanivorax xenomutans GCA 900217905 1
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AAI clade 29-2-1-5
medoid: Amphritea atlantica GCA 900111095 1
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AAI clade 29-2-1-6
medoid: Neptunomonas japonica DSM 18939 GCA 000422765 1
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AAI clade 29-2-1-7
medoid: Nitrincola tibetensis GCA 003284585 1
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AAI clade 29-2-1-8
medoid: Moraxella lacunata GCA 002027545 1
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AAI clade 29-2-1-9
medoid: Panacagrimonas perspica GCA 004364935 1
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AAI clade 29-2-1-10
medoid: Saccharospirillum alexandrii GCA 004000275 1
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AAI clade 29-2-1-11
medoid: Alcanivorax profundi GCA 003597125 1
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AAI clade 29-2-1-12
medoid: Arenicella chitinivorans GCA 014651515 1
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AAI clade 29-2-1-13
medoid: GCF 019061305 1
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AAI clade 29-2-1-14
medoid: GCF 016653405 1
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AAI clade 29-2-1-15
medoid: Neptuniibacter pectenicola GCA 001597735 1
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AAI clade 29-2-1-16
medoid: Marinobacterium ramblicola GCA 019084545 1
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AAI clade 29-2-1-17
medoid: Marinobacterium aestuarii GCA 001651805 1
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AAI clade 29-2-1-18
medoid: GCA 002791575 1
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AAI clade 29-2-1-19
medoid: Motiliproteus coralliicola GCA 003345655 1
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AAI clade 29-2-1-20
medoid: Nitrincola schmidtii GCA 008973715 1
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AAI clade 29-2-1-21
medoid: GCF 015687175 1
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AAI clade 29-2-1-22
medoid: GCF 000378605 1
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AAI clade 29-2-1-23
medoid: Wohlfahrtiimonas chitiniclastica DSM 18708 GCA 000375345 1
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AAI clade 29-2-1-24
medoid: Methylotuvimicrobium alcaliphilum 20Z GCA 000968535 1
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AAI clade 29-2-1-25
medoid: GCA 002400775 1
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AAI clade 29-2-1-26
medoid: Pseudodesulfovibrio profundus GCA 900217235 1
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AAI clade 29-2-1-27
medoid: GCA 002340305 1
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AAI clade 29-2-1-28
medoid: Aliamphritea hakodatensis GCA 024347195 1
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AAI clade 29-2-1-29
medoid: Candidatus Synchoanobacter obligatus GCA 024259865 1
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AAI clade 29-2-1-30
medoid: Candidatus Thiodictyon syntrophicum GCA 002813775 1
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AAI clade 29-2-1-31
medoid: GCA 012269655 1
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AAI clade 29-2-1-32
medoid: GCA 007694055 1
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AAI clade 29-2-1-33
medoid: GCA 905480215 1
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AAI clade 29-2-1-34
medoid: GCA 009937625 1
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AAI clade 29-2-1-35
medoid: GCA 000227525 2
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AAI clade 29-2-1-35-1
medoid: GCA 000227525 2
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AAI clade 29-2-1-35-1-1
medoid: GCA 902594275 1
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AAI clade 29-2-1-35-1-2
medoid: GCA 002705325 1
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AAI clade 29-2-1-35-1-3
medoid: GCA 002705795 1
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AAI clade 29-2-1-35-1-4
medoid: GCA 008087055 1
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AAI clade 29-2-1-35-1-5
medoid: GCA 009886945 1
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AAI clade 29-2-1-35-1-6
medoid: GCA 010024125 1
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AAI clade 29-2-1-35-1-7
medoid: GCA 902541775 1
1 dataset: GCA 902541775 1 (AAI: 100.0%)
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AAI clade 29-2-1-35-1-8
medoid: GCA 902558075 1
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AAI clade 29-2-1-35-1-1
medoid: GCA 902594275 1
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AAI clade 29-2-1-35-2
medoid: GCA 002714245 1
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AAI clade 29-2-1-35-3
medoid: GCA 002731015 1
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AAI clade 29-2-1-35-4
medoid: GCA 009922705 1
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AAI clade 29-2-1-35-5
medoid: GCA 018402605 1
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AAI clade 29-2-1-35-1
medoid: GCA 000227525 2
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AAI clade 29-2-1-36
medoid: GCA 002163025 1
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AAI clade 29-2-1-37
medoid: GCA 001543005 1
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AAI clade 29-2-1-38
medoid: asm GCA 001801565 1
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AAI clade 29-2-1-39
medoid: GCA 012959695 1
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AAI clade 29-2-1-40
medoid: GCA 002683575 1
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AAI clade 29-2-1-41
medoid: GCA 002684495 1
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AAI clade 29-2-1-42
medoid: GCA 903953455 1
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AAI clade 29-2-1-43
medoid: GCA 017577365 1
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AAI clade 29-2-1-44
medoid: GCA 002312935 1
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AAI clade 29-2-1-45
medoid: GCA 011523685 1
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AAI clade 29-2-1-46
medoid: GCA 002868865 1
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AAI clade 29-2-1-47
medoid: GCA 002686055 1
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AAI clade 29-2-1-48
medoid: GCA 002691585 1
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AAI clade 29-2-1-49
medoid: GCA 002726655 1
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AAI clade 29-2-1-50
medoid: GCA 903926205 1
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AAI clade 29-2-1-51
medoid: miga DE18A TARA PSW MAG 00011
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AAI clade 29-2-1-52
medoid: GCA 013215275 1
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AAI clade 29-2-1-53
medoid: GCF 013283365 1
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AAI clade 29-2-1-54
medoid: GCA 018240505 1
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AAI clade 29-2-1-55
medoid: GCF 018919485 1
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AAI clade 29-2-1-56
medoid: GCA 018664045 1
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AAI clade 29-2-1-1
medoid: GCA 016744155 1
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AAI clade 29-2-2
medoid: Thiomicrorhabdus immobilis GCA 021654855 1
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AAI clade 29-2-1
medoid: GCA 003250495 1
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AAI clade 29-3
medoid: GCF 016597725 1
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AAI clade 29-4
medoid: Marinomonas lutimaris GCA 019426345 1
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AAI clade 29-1
medoid: GCF 000219565 1
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AAI clade 30
medoid: GCA 015061955 1
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AAI clade 31
medoid: GCA 000421065 1
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AAI clade 32
medoid: GCA 002438845 1
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AAI clade 33
medoid: GCA 003602665 1
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AAI clade 34
medoid: GCA 910585295 1
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AAI clade 35
medoid: Nocardioides iriomotensis GCA 004168035 1
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AAI clade 36
medoid: GCA 017608235 1
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AAI clade 37
medoid: GCF 004332155 1
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AAI clade 38
medoid: GCA 009712635 1
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AAI clade 39
medoid: GCA 903926605 1
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AAI clade 40
medoid: GCA 017645955 1
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AAI clade 41
medoid: GCA 016793015 1
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AAI clade 42
medoid: GCA 900538305 1
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AAI clade 43
medoid: GCA 001002765 1
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AAI clade 44
medoid: GCA 902559935 1
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AAI clade 45
medoid: GCA 011371455 1
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AAI clade 46
medoid: GCA 000435515 1
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AAI clade 47
medoid: Anaerostipes butyraticus GCA 016586355 1
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AAI clade 48
medoid: GCF 002835935 1
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AAI clade 49
medoid: miga PS19A RaymondF 2016 P20E90 bin 24
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AAI clade 50
medoid: GCA 002338255 1
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AAI clade 51
medoid: Haloprofundus salinisoli GCA 020097815 1
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AAI clade 52
medoid: GCA 900167925 1
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AAI clade 53
medoid: GCA 900550065 1
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AAI clade 54
medoid: GCA 002314915 1
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AAI clade 55
medoid: Rhizorhabdus dicambivorans GCA 002355275 1
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AAI clade 56
medoid: GCA 005882335 1
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AAI clade 57
medoid: GCA 011065225 1
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AAI clade 58
medoid: GCA 016781775 1
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AAI clade 59
medoid: GCA 002362595 1
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AAI clade 60
medoid: GCA 016214555 1
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AAI clade 61
medoid: GCF 014764505 1
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AAI clade 62
medoid: GCA 902623215 1
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AAI clade 63
medoid: GCA 003514205 1
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AAI clade 64
medoid: GCF 009707955 1
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AAI clade 65
medoid: GCF 000348745 1
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AAI clade 66
medoid: GCA 900772425 1
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AAI clade 67
medoid: GCF 003590645 1
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AAI clade 68
medoid: GCF 902506105 1
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AAI clade 69
medoid: GCF 013407275 1
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AAI clade 70
medoid: GCA 015494795 1
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AAI clade 71
medoid: GCA 016709995 1
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AAI clade 72
medoid: GCA 002493965 1
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AAI clade 73
medoid: GCA 009469665 1
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AAI clade 74
medoid: GCA 001799635 1
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AAI clade 75
medoid: GCA 016650235 1
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AAI clade 76
medoid: Ochrovirga pacifica GCA 000220525 2
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AAI clade 77
medoid: GCA 009903855 1
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AAI clade 78
medoid: GCA 019204045 1
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AAI clade 79
medoid: GCA 902783375 1
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AAI clade 80
medoid: GCF 000350105 1
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AAI clade 81
medoid: GCA 903901345 1
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AAI clade 82
medoid: GCA 015075425 1
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AAI clade 83
medoid: GCA 001508835 1
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AAI clade 84
medoid: GCA 017746715 1
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AAI clade 85
medoid: Nocardioides plantarum GCA 006346395 1
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AAI clade 86
medoid: GCA 017438285 1
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AAI clade 87
medoid: GCA 002712945 1
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AAI clade 88
medoid: GCF 002214625 1
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AAI clade 89
medoid: GCA 902773215 1
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AAI clade 90
medoid: GCA 002723385 1
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AAI clade 91
medoid: GCA 019113455 1
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AAI clade 92
medoid: GCA 016286935 1
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AAI clade 93
medoid: GCA 003566775 1