AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
  • AAI clade 2 medoid: GCA 017448355 1
  • AAI clade 3 medoid: GCA 017467885 1
  • AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
  • AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
  • AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
  • AAI clade 7 medoid: miga SS18A Bin 41 contigs
  • AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
  • AAI clade 9 medoid: GCA 900755995 1
  • AAI clade 10 medoid: GCF 013113835 1
  • AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
  • AAI clade 12 medoid: GCA 016840965 1
  • AAI clade 13 medoid: GCA 017622235 1
  • AAI clade 14 medoid: GCA 904390925 1
  • AAI clade 15 medoid: GCA 002375985 1
  • AAI clade 16 medoid: GCA 003963015 1
  • AAI clade 17 medoid: GCA 001771585 1
  • AAI clade 18 medoid: GCF 018398895 1
  • AAI clade 19 medoid: GCA 001295775 1
  • AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
  • AAI clade 21 medoid: GCF 009363535 1
  • AAI clade 22 medoid: GCA 904374795 1
  • AAI clade 23 medoid: GCA 903955385 1
  • AAI clade 24 medoid: GCA 903887975 1
  • AAI clade 25 medoid: GCA 902602655 1
  • AAI clade 26 medoid: GCA 905235755 1
  • AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
  • AAI clade 28 medoid: GCA 903909555 1
  • AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
    • AAI clade 29-1 medoid: GCF 000219565 1
    • AAI clade 29-2 medoid: GCA 003250495 1
      • AAI clade 29-2-1 medoid: GCA 003250495 1
        • AAI clade 29-2-1-1 medoid: GCA 016744155 1
        • AAI clade 29-2-1-2 medoid: GCA 001644975 1
        • AAI clade 29-2-1-3 medoid: Francisella tularensis subsp. novicida U112 GCA 000833375 1
        • AAI clade 29-2-1-4 medoid: Alloalcanivorax xenomutans GCA 900217905 1
        • AAI clade 29-2-1-5 medoid: Amphritea atlantica GCA 900111095 1
        • AAI clade 29-2-1-6 medoid: Neptunomonas japonica DSM 18939 GCA 000422765 1
        • AAI clade 29-2-1-7 medoid: Nitrincola tibetensis GCA 003284585 1
        • AAI clade 29-2-1-8 medoid: Moraxella lacunata GCA 002027545 1
        • AAI clade 29-2-1-9 medoid: Panacagrimonas perspica GCA 004364935 1
        • AAI clade 29-2-1-10 medoid: Saccharospirillum alexandrii GCA 004000275 1
        • AAI clade 29-2-1-11 medoid: Alcanivorax profundi GCA 003597125 1
        • AAI clade 29-2-1-12 medoid: Arenicella chitinivorans GCA 014651515 1
        • AAI clade 29-2-1-13 medoid: GCF 019061305 1
        • AAI clade 29-2-1-14 medoid: GCF 016653405 1
        • AAI clade 29-2-1-15 medoid: Neptuniibacter pectenicola GCA 001597735 1
        • AAI clade 29-2-1-16 medoid: Marinobacterium ramblicola GCA 019084545 1
        • AAI clade 29-2-1-17 medoid: Marinobacterium aestuarii GCA 001651805 1
        • AAI clade 29-2-1-18 medoid: GCA 002791575 1
        • AAI clade 29-2-1-19 medoid: Motiliproteus coralliicola GCA 003345655 1
        • AAI clade 29-2-1-20 medoid: Nitrincola schmidtii GCA 008973715 1
        • AAI clade 29-2-1-21 medoid: GCF 015687175 1
        • AAI clade 29-2-1-22 medoid: GCF 000378605 1
        • AAI clade 29-2-1-23 medoid: Wohlfahrtiimonas chitiniclastica DSM 18708 GCA 000375345 1
        • AAI clade 29-2-1-24 medoid: Methylotuvimicrobium alcaliphilum 20Z GCA 000968535 1
        • AAI clade 29-2-1-25 medoid: GCA 002400775 1
        • AAI clade 29-2-1-26 medoid: Pseudodesulfovibrio profundus GCA 900217235 1
        • AAI clade 29-2-1-27 medoid: GCA 002340305 1
        • AAI clade 29-2-1-28 medoid: Aliamphritea hakodatensis GCA 024347195 1
        • AAI clade 29-2-1-29 medoid: Candidatus Synchoanobacter obligatus GCA 024259865 1
        • AAI clade 29-2-1-30 medoid: Candidatus Thiodictyon syntrophicum GCA 002813775 1
        • AAI clade 29-2-1-31 medoid: GCA 012269655 1
        • AAI clade 29-2-1-32 medoid: GCA 007694055 1
        • AAI clade 29-2-1-33 medoid: GCA 905480215 1
          5 datasets: Woeseia oceani GCA 001677435 1 (AAI: 57.1%), GCA 003229095 1 (AAI: 55.67%), GCA 009937605 1 (AAI: 61.16%), GCA 009937615 1 (AAI: 59.79%), and GCA 905480215 1 (AAI: 100.0%)
        • AAI clade 29-2-1-34 medoid: GCA 009937625 1
        • AAI clade 29-2-1-35 medoid: GCA 000227525 2
        • AAI clade 29-2-1-36 medoid: GCA 002163025 1
        • AAI clade 29-2-1-37 medoid: GCA 001543005 1
        • AAI clade 29-2-1-38 medoid: asm GCA 001801565 1
        • AAI clade 29-2-1-39 medoid: GCA 012959695 1
        • AAI clade 29-2-1-40 medoid: GCA 002683575 1
        • AAI clade 29-2-1-41 medoid: GCA 002684495 1
        • AAI clade 29-2-1-42 medoid: GCA 903953455 1
        • AAI clade 29-2-1-43 medoid: GCA 017577365 1
        • AAI clade 29-2-1-44 medoid: GCA 002312935 1
        • AAI clade 29-2-1-45 medoid: GCA 011523685 1
        • AAI clade 29-2-1-46 medoid: GCA 002868865 1
        • AAI clade 29-2-1-47 medoid: GCA 002686055 1
        • AAI clade 29-2-1-48 medoid: GCA 002691585 1
        • AAI clade 29-2-1-49 medoid: GCA 002726655 1
        • AAI clade 29-2-1-50 medoid: GCA 903926205 1
        • AAI clade 29-2-1-51 medoid: miga DE18A TARA PSW MAG 00011
        • AAI clade 29-2-1-52 medoid: GCA 013215275 1
        • AAI clade 29-2-1-53 medoid: GCF 013283365 1
        • AAI clade 29-2-1-54 medoid: GCA 018240505 1
        • AAI clade 29-2-1-55 medoid: GCF 018919485 1
        • AAI clade 29-2-1-56 medoid: GCA 018664045 1
      • AAI clade 29-2-2 medoid: Thiomicrorhabdus immobilis GCA 021654855 1
    • AAI clade 29-3 medoid: GCF 016597725 1
    • AAI clade 29-4 medoid: Marinomonas lutimaris GCA 019426345 1
  • AAI clade 30 medoid: GCA 015061955 1
  • AAI clade 31 medoid: GCA 000421065 1
  • AAI clade 32 medoid: GCA 002438845 1
  • AAI clade 33 medoid: GCA 003602665 1
  • AAI clade 34 medoid: GCA 910585295 1
  • AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
  • AAI clade 36 medoid: GCA 017608235 1
  • AAI clade 37 medoid: GCF 004332155 1
  • AAI clade 38 medoid: GCA 009712635 1
  • AAI clade 39 medoid: GCA 903926605 1
  • AAI clade 40 medoid: GCA 017645955 1
  • AAI clade 41 medoid: GCA 016793015 1
  • AAI clade 42 medoid: GCA 900538305 1
  • AAI clade 43 medoid: GCA 001002765 1
  • AAI clade 44 medoid: GCA 902559935 1
  • AAI clade 45 medoid: GCA 011371455 1
  • AAI clade 46 medoid: GCA 000435515 1
  • AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
  • AAI clade 48 medoid: GCF 002835935 1
  • AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
  • AAI clade 50 medoid: GCA 002338255 1
  • AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
  • AAI clade 52 medoid: GCA 900167925 1
  • AAI clade 53 medoid: GCA 900550065 1
  • AAI clade 54 medoid: GCA 002314915 1
  • AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
  • AAI clade 56 medoid: GCA 005882335 1
  • AAI clade 57 medoid: GCA 011065225 1
  • AAI clade 58 medoid: GCA 016781775 1
  • AAI clade 59 medoid: GCA 002362595 1
  • AAI clade 60 medoid: GCA 016214555 1
  • AAI clade 61 medoid: GCF 014764505 1
  • AAI clade 62 medoid: GCA 902623215 1
  • AAI clade 63 medoid: GCA 003514205 1
  • AAI clade 64 medoid: GCF 009707955 1
  • AAI clade 65 medoid: GCF 000348745 1
  • AAI clade 66 medoid: GCA 900772425 1
  • AAI clade 67 medoid: GCF 003590645 1
  • AAI clade 68 medoid: GCF 902506105 1
  • AAI clade 69 medoid: GCF 013407275 1
  • AAI clade 70 medoid: GCA 015494795 1
  • AAI clade 71 medoid: GCA 016709995 1
  • AAI clade 72 medoid: GCA 002493965 1
  • AAI clade 73 medoid: GCA 009469665 1
  • AAI clade 74 medoid: GCA 001799635 1
  • AAI clade 75 medoid: GCA 016650235 1
  • AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
  • AAI clade 77 medoid: GCA 009903855 1
  • AAI clade 78 medoid: GCA 019204045 1
  • AAI clade 79 medoid: GCA 902783375 1
  • AAI clade 80 medoid: GCF 000350105 1
  • AAI clade 81 medoid: GCA 903901345 1
  • AAI clade 82 medoid: GCA 015075425 1
  • AAI clade 83 medoid: GCA 001508835 1
  • AAI clade 84 medoid: GCA 017746715 1
  • AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
  • AAI clade 86 medoid: GCA 017438285 1
  • AAI clade 87 medoid: GCA 002712945 1
  • AAI clade 88 medoid: GCF 002214625 1
  • AAI clade 89 medoid: GCA 902773215 1
  • AAI clade 90 medoid: GCA 002723385 1
  • AAI clade 91 medoid: GCA 019113455 1
  • AAI clade 92 medoid: GCA 016286935 1
  • AAI clade 93 medoid: GCA 003566775 1