AAI clade 13-3-5-5 | MiGA Online

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AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
AAI clade 2 medoid: GCA 017448355 1
AAI clade 3 medoid: GCA 017467885 1
AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
AAI clade 7 medoid: miga SS18A Bin 41 contigs
AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
AAI clade 9 medoid: GCA 900755995 1
AAI clade 10 medoid: GCF 013113835 1
AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
AAI clade 12 medoid: GCA 016840965 1
AAI clade 13 medoid: GCA 017622235 1
- AAI clade 13-1 medoid: Borreliella lanei GCA 014205895 1
- AAI clade 13-2 medoid: Brachyspira hyodysenteriae ATCC 27164 GCA 001676785 2
- AAI clade 13-3 medoid: GCA 001603115 1
  - AAI clade 13-3-1 medoid: Alkalispirochaeta americana GCA 900156105 1
  - AAI clade 13-3-2 medoid: Spirochaeta lutea GCA 000758165 1
  - AAI clade 13-3-3 medoid: GCA 903899985 1
  - AAI clade 13-3-4 medoid: Sediminispirochaeta bajacaliforniensis DSM 16054 GCA 000378205 1
  - AAI clade 13-3-5 medoid: GCA 001603115 1
    
    AAI clade 13-3-5-1 medoid: Sphaerochaeta coccoides DSM 17374 GCA 000208385 1
    
    AAI clade 13-3-5-2 medoid: GCA 002432715 1
    
    AAI clade 13-3-5-3 medoid: Sphaerochaeta pleomorpha str. Grapes GCA 000236685 1
    
    AAI clade 13-3-5-4 medoid: GCA 001604325 1
    
    AAI clade 13-3-5-5 medoid: GCA 001603115 1
    
    3 datasets: GCA 001603115 1 (AAI: 100.0%), GCA 009930195 1 (AAI: 85.93%), and GCA 012519125 1 (AAI: 95.38%)
    
    AAI clade 13-3-5-6 medoid: GCA 001604275 1
  - AAI clade 13-3-6 medoid: Spirochaeta cellobiosiphila DSM 17781 GCA 000426705 1
  - AAI clade 13-3-7 medoid: Spirochaeta isovalerica GCA 014207565 1
  - AAI clade 13-3-8 medoid: Spirochaeta thermophila DSM 6578 GCA 000184345 2
  - AAI clade 13-3-9 medoid: Bullifex porci GCA 009695635 1
  - AAI clade 13-3-10 medoid: GCF 001749745 1
  - AAI clade 13-3-11 medoid: GCA 002408085 1
  - AAI clade 13-3-12 medoid: GCF 016406725 1
  - AAI clade 13-3-13 medoid: GCA 016936295 1
  - AAI clade 13-3-14 medoid: GCA 001468855 1
  - AAI clade 13-3-15 medoid: GCA 001604265 1
  - AAI clade 13-3-16 medoid: GCA 002070605 1
  - AAI clade 13-3-17 medoid: GCA 001829155 1
  - AAI clade 13-3-18 medoid: GCA 001829315 1
  - AAI clade 13-3-19 medoid: GCA 017632495 1
  - AAI clade 13-3-20 medoid: GCA 002167285 1
  - AAI clade 13-3-21 medoid: GCA 002238925 1
  - AAI clade 13-3-22 medoid: GCA 905236385 1
  - AAI clade 13-3-23 medoid: GCA 002352375 1
  - AAI clade 13-3-24 medoid: GCA 002381765 1
  - AAI clade 13-3-25 medoid: GCA 002400895 1
  - AAI clade 13-3-26 medoid: miga PS19A CosteaPI 2017 SID713A028 11 0 0 bin 37
  - AAI clade 13-3-27 medoid: GCA 002839355 1
  - AAI clade 13-3-28 medoid: GCA 018623505 1
  - AAI clade 13-3-29 medoid: GCA 002702685 1
  - AAI clade 13-3-30 medoid: GCA 018663815 1
  - AAI clade 13-3-31 medoid: GCA 002723375 1
  - AAI clade 13-3-32 medoid: GCA 013151965 1
  - AAI clade 13-3-33 medoid: GCA 003245835 1
  - AAI clade 13-3-34 medoid: GCA 003446545 1
  - AAI clade 13-3-35 medoid: GCA 902797395 1
  - AAI clade 13-3-36 medoid: GCA 003497555 1
  - AAI clade 13-3-37 medoid: GCA 003552985 1
  - AAI clade 13-3-38 medoid: GCA 007135605 1
  - AAI clade 13-3-39 medoid: GCA 003554375 1
  - AAI clade 13-3-40 medoid: GCA 003557605 1
  - AAI clade 13-3-41 medoid: GCA 007693325 1
  - AAI clade 13-3-42 medoid: GCA 007127105 1
  - AAI clade 13-3-43 medoid: GCA 003566875 1
  - AAI clade 13-3-44 medoid: GCA 003641695 1
  - AAI clade 13-3-45 medoid: miga WB18A mgm4762944 3 050 upload
  - AAI clade 13-3-46 medoid: GCA 011049595 1
  - AAI clade 13-3-47 medoid: GCA 016929065 1
  - AAI clade 13-3-48 medoid: GCA 003973385 1
  - AAI clade 13-3-49 medoid: GCA 004294855 1
  - AAI clade 13-3-50 medoid: GCA 007127335 1
  - AAI clade 13-3-51 medoid: GCA 007121385 1
  - AAI clade 13-3-52 medoid: GCA 007128315 1
  - AAI clade 13-3-53 medoid: GCA 007694025 1
  - AAI clade 13-3-54 medoid: GCA 007130025 1
  - AAI clade 13-3-55 medoid: GCA 009778835 1
  - AAI clade 13-3-56 medoid: GCA 009784515 1
  - AAI clade 13-3-57 medoid: GCA 016649775 1
  - AAI clade 13-3-58 medoid: GCA 011046055 1
  - AAI clade 13-3-59 medoid: GCA 011049745 1
  - AAI clade 13-3-60 medoid: GCA 011524535 1
  - AAI clade 13-3-61 medoid: GCA 012514595 1
  - AAI clade 13-3-62 medoid: GCA 012728215 1
  - AAI clade 13-3-63 medoid: GCA 013043995 1
  - AAI clade 13-3-64 medoid: GCA 016784705 1
  - AAI clade 13-3-65 medoid: GCA 013821615 1
  - AAI clade 13-3-66 medoid: GCA 014728785 1
  - AAI clade 13-3-67 medoid: GCA 014764485 1
  - AAI clade 13-3-68 medoid: GCA 015233285 1
  - AAI clade 13-3-69 medoid: GCA 015661935 1
  - AAI clade 13-3-70 medoid: GCA 016182565 1
  - AAI clade 13-3-71 medoid: GCA 016786485 1
  - AAI clade 13-3-72 medoid: GCA 016789035 1
  - AAI clade 13-3-73 medoid: GCA 016928415 1
  - AAI clade 13-3-74 medoid: GCA 016935735 1
  - AAI clade 13-3-75 medoid: miga WB18A mgm4762884 3 050 upload
  - AAI clade 13-3-76 medoid: GCA 016935715 1
  - AAI clade 13-3-77 medoid: asm GCA 003644145 1
  - AAI clade 13-3-78 medoid: GCA 016935915 1
  - AAI clade 13-3-79 medoid: GCA 016936615 1
  - AAI clade 13-3-80 medoid: GCA 016937215 1
  - AAI clade 13-3-81 medoid: GCA 017302015 1
  - AAI clade 13-3-82 medoid: GCA 017642445 1
  - AAI clade 13-3-83 medoid: GCA 017998025 1
  - AAI clade 13-3-84 medoid: GCA 018062405 1
  - AAI clade 13-3-85 medoid: GCA 018263175 1
  - AAI clade 13-3-86 medoid: GCA 018646675 1
  - AAI clade 13-3-87 medoid: GCA 018822065 1
  - AAI clade 13-3-88 medoid: GCA 900299205 1
  - AAI clade 13-3-89 medoid: GCA 905215015 1
  - AAI clade 13-3-90 medoid: GCA 903896915 1
  - AAI clade 13-3-91 medoid: asm GCA 000991765 1
  - AAI clade 13-3-92 medoid: asm GCA 002783465 1
  - AAI clade 13-3-93 medoid: asm GCA 003669285 1
  - AAI clade 13-3-94 medoid: miga DE18A TARA RED MAG 00020
- AAI clade 13-4 medoid: GCA 009785215 1
- AAI clade 13-5 medoid: GCF 900215325 1
- AAI clade 13-6 medoid: Treponema medium ATCC 700293 GCA 000413035 1
- AAI clade 13-7 medoid: GCA 017940255 1
AAI clade 14 medoid: GCA 904390925 1
AAI clade 15 medoid: GCA 002375985 1
AAI clade 16 medoid: GCA 003963015 1
AAI clade 17 medoid: GCA 001771585 1
AAI clade 18 medoid: GCF 018398895 1
AAI clade 19 medoid: GCA 001295775 1
AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
AAI clade 21 medoid: GCF 009363535 1
AAI clade 22 medoid: GCA 904374795 1
AAI clade 23 medoid: GCA 903955385 1
AAI clade 24 medoid: GCA 903887975 1
AAI clade 25 medoid: GCA 902602655 1
AAI clade 26 medoid: GCA 905235755 1
AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
AAI clade 28 medoid: GCA 903909555 1
AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
AAI clade 30 medoid: GCA 015061955 1
AAI clade 31 medoid: GCA 000421065 1
AAI clade 32 medoid: GCA 002438845 1
AAI clade 33 medoid: GCA 003602665 1
AAI clade 34 medoid: GCA 910585295 1
AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
AAI clade 36 medoid: GCA 017608235 1
AAI clade 37 medoid: GCF 004332155 1
AAI clade 38 medoid: GCA 009712635 1
AAI clade 39 medoid: GCA 903926605 1
AAI clade 40 medoid: GCA 017645955 1
AAI clade 41 medoid: GCA 016793015 1
AAI clade 42 medoid: GCA 900538305 1
AAI clade 43 medoid: GCA 001002765 1
AAI clade 44 medoid: GCA 902559935 1
AAI clade 45 medoid: GCA 011371455 1
AAI clade 46 medoid: GCA 000435515 1
AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
AAI clade 48 medoid: GCF 002835935 1
AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
AAI clade 50 medoid: GCA 002338255 1
AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
AAI clade 52 medoid: GCA 900167925 1
AAI clade 53 medoid: GCA 900550065 1
AAI clade 54 medoid: GCA 002314915 1
AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
AAI clade 56 medoid: GCA 005882335 1
AAI clade 57 medoid: GCA 011065225 1
AAI clade 58 medoid: GCA 016781775 1
AAI clade 59 medoid: GCA 002362595 1
AAI clade 60 medoid: GCA 016214555 1
AAI clade 61 medoid: GCF 014764505 1
AAI clade 62 medoid: GCA 902623215 1
AAI clade 63 medoid: GCA 003514205 1
AAI clade 64 medoid: GCF 009707955 1
AAI clade 65 medoid: GCF 000348745 1
AAI clade 66 medoid: GCA 900772425 1
AAI clade 67 medoid: GCF 003590645 1
AAI clade 68 medoid: GCF 902506105 1
AAI clade 69 medoid: GCF 013407275 1
AAI clade 70 medoid: GCA 015494795 1
AAI clade 71 medoid: GCA 016709995 1
AAI clade 72 medoid: GCA 002493965 1
AAI clade 73 medoid: GCA 009469665 1
AAI clade 74 medoid: GCA 001799635 1
AAI clade 75 medoid: GCA 016650235 1
AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
AAI clade 77 medoid: GCA 009903855 1
AAI clade 78 medoid: GCA 019204045 1
AAI clade 79 medoid: GCA 902783375 1
AAI clade 80 medoid: GCF 000350105 1
AAI clade 81 medoid: GCA 903901345 1
AAI clade 82 medoid: GCA 015075425 1
AAI clade 83 medoid: GCA 001508835 1
AAI clade 84 medoid: GCA 017746715 1
AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
AAI clade 86 medoid: GCA 017438285 1
AAI clade 87 medoid: GCA 002712945 1
AAI clade 88 medoid: GCF 002214625 1
AAI clade 89 medoid: GCA 902773215 1
AAI clade 90 medoid: GCA 002723385 1
AAI clade 91 medoid: GCA 019113455 1
AAI clade 92 medoid: GCA 016286935 1
AAI clade 93 medoid: GCA 003566775 1

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