AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Brucella daejeonensis GCA 014199265 1
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AAI clade 2
medoid: GCA 017448355 1
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AAI clade 3
medoid: GCA 017467885 1
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AAI clade 4
medoid: Pedobacter duraquae GCA 004362245 1
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AAI clade 5
medoid: Streptomyces angustmyceticus GCA 002154415 1
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AAI clade 6
medoid: Pseudomonas migulae GCA 024169545 1
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AAI clade 7
medoid: miga SS18A Bin 41 contigs
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AAI clade 8
medoid: Mucilaginibacter ginkgonis GCA 009754905 2
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AAI clade 9
medoid: GCA 900755995 1
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AAI clade 10
medoid: GCF 013113835 1
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AAI clade 11
medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
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AAI clade 12
medoid: GCA 016840965 1
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AAI clade 13
medoid: GCA 017622235 1
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AAI clade 13-1
medoid: Borreliella lanei GCA 014205895 1
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AAI clade 13-2
medoid: Brachyspira hyodysenteriae ATCC 27164 GCA 001676785 2
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AAI clade 13-3
medoid: GCA 001603115 1
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AAI clade 13-3-1
medoid: Alkalispirochaeta americana GCA 900156105 1
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AAI clade 13-3-2
medoid: Spirochaeta lutea GCA 000758165 1
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AAI clade 13-3-3
medoid: GCA 903899985 1
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AAI clade 13-3-4
medoid: Sediminispirochaeta bajacaliforniensis DSM 16054 GCA 000378205 1
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AAI clade 13-3-5
medoid: GCA 001603115 1
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AAI clade 13-3-6
medoid: Spirochaeta cellobiosiphila DSM 17781 GCA 000426705 1
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AAI clade 13-3-7
medoid: Spirochaeta isovalerica GCA 014207565 1
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AAI clade 13-3-8
medoid: Spirochaeta thermophila DSM 6578 GCA 000184345 2
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AAI clade 13-3-9
medoid: Bullifex porci GCA 009695635 1
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AAI clade 13-3-10
medoid: GCF 001749745 1
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AAI clade 13-3-11
medoid: GCA 002408085 1
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AAI clade 13-3-12
medoid: GCF 016406725 1
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AAI clade 13-3-13
medoid: GCA 016936295 1
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AAI clade 13-3-14
medoid: GCA 001468855 1
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AAI clade 13-3-15
medoid: GCA 001604265 1
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AAI clade 13-3-16
medoid: GCA 002070605 1
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AAI clade 13-3-17
medoid: GCA 001829155 1
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AAI clade 13-3-18
medoid: GCA 001829315 1
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AAI clade 13-3-19
medoid: GCA 017632495 1
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AAI clade 13-3-20
medoid: GCA 002167285 1
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AAI clade 13-3-21
medoid: GCA 002238925 1
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AAI clade 13-3-22
medoid: GCA 905236385 1
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AAI clade 13-3-23
medoid: GCA 002352375 1
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AAI clade 13-3-24
medoid: GCA 002381765 1
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AAI clade 13-3-25
medoid: GCA 002400895 1
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AAI clade 13-3-26
medoid: miga PS19A CosteaPI 2017 SID713A028 11 0 0 bin 37
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AAI clade 13-3-27
medoid: GCA 002839355 1
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AAI clade 13-3-28
medoid: GCA 018623505 1
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AAI clade 13-3-29
medoid: GCA 002702685 1
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AAI clade 13-3-30
medoid: GCA 018663815 1
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AAI clade 13-3-31
medoid: GCA 002723375 1
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AAI clade 13-3-32
medoid: GCA 013151965 1
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AAI clade 13-3-33
medoid: GCA 003245835 1
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AAI clade 13-3-34
medoid: GCA 003446545 1
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AAI clade 13-3-35
medoid: GCA 902797395 1
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AAI clade 13-3-36
medoid: GCA 003497555 1
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AAI clade 13-3-37
medoid: GCA 003552985 1
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AAI clade 13-3-38
medoid: GCA 007135605 1
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AAI clade 13-3-39
medoid: GCA 003554375 1
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AAI clade 13-3-40
medoid: GCA 003557605 1
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AAI clade 13-3-41
medoid: GCA 007693325 1
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AAI clade 13-3-42
medoid: GCA 007127105 1
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AAI clade 13-3-43
medoid: GCA 003566875 1
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AAI clade 13-3-44
medoid: GCA 003641695 1
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AAI clade 13-3-45
medoid: miga WB18A mgm4762944 3 050 upload
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AAI clade 13-3-46
medoid: GCA 011049595 1
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AAI clade 13-3-47
medoid: GCA 016929065 1
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AAI clade 13-3-48
medoid: GCA 003973385 1
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AAI clade 13-3-49
medoid: GCA 004294855 1
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AAI clade 13-3-50
medoid: GCA 007127335 1
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AAI clade 13-3-51
medoid: GCA 007121385 1
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AAI clade 13-3-52
medoid: GCA 007128315 1
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AAI clade 13-3-53
medoid: GCA 007694025 1
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AAI clade 13-3-54
medoid: GCA 007130025 1
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AAI clade 13-3-55
medoid: GCA 009778835 1
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AAI clade 13-3-56
medoid: GCA 009784515 1
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AAI clade 13-3-57
medoid: GCA 016649775 1
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AAI clade 13-3-58
medoid: GCA 011046055 1
1 dataset: GCA 011046055 1 (AAI: 100.0%)
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AAI clade 13-3-59
medoid: GCA 011049745 1
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AAI clade 13-3-60
medoid: GCA 011524535 1
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AAI clade 13-3-61
medoid: GCA 012514595 1
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AAI clade 13-3-62
medoid: GCA 012728215 1
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AAI clade 13-3-63
medoid: GCA 013043995 1
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AAI clade 13-3-64
medoid: GCA 016784705 1
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AAI clade 13-3-65
medoid: GCA 013821615 1
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AAI clade 13-3-66
medoid: GCA 014728785 1
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AAI clade 13-3-67
medoid: GCA 014764485 1
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AAI clade 13-3-68
medoid: GCA 015233285 1
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AAI clade 13-3-69
medoid: GCA 015661935 1
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AAI clade 13-3-70
medoid: GCA 016182565 1
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AAI clade 13-3-71
medoid: GCA 016786485 1
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AAI clade 13-3-72
medoid: GCA 016789035 1
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AAI clade 13-3-73
medoid: GCA 016928415 1
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AAI clade 13-3-74
medoid: GCA 016935735 1
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AAI clade 13-3-75
medoid: miga WB18A mgm4762884 3 050 upload
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AAI clade 13-3-76
medoid: GCA 016935715 1
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AAI clade 13-3-77
medoid: asm GCA 003644145 1
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AAI clade 13-3-78
medoid: GCA 016935915 1
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AAI clade 13-3-79
medoid: GCA 016936615 1
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AAI clade 13-3-80
medoid: GCA 016937215 1
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AAI clade 13-3-81
medoid: GCA 017302015 1
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AAI clade 13-3-82
medoid: GCA 017642445 1
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AAI clade 13-3-83
medoid: GCA 017998025 1
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AAI clade 13-3-84
medoid: GCA 018062405 1
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AAI clade 13-3-85
medoid: GCA 018263175 1
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AAI clade 13-3-86
medoid: GCA 018646675 1
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AAI clade 13-3-87
medoid: GCA 018822065 1
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AAI clade 13-3-88
medoid: GCA 900299205 1
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AAI clade 13-3-89
medoid: GCA 905215015 1
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AAI clade 13-3-90
medoid: GCA 903896915 1
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AAI clade 13-3-91
medoid: asm GCA 000991765 1
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AAI clade 13-3-92
medoid: asm GCA 002783465 1
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AAI clade 13-3-93
medoid: asm GCA 003669285 1
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AAI clade 13-3-94
medoid: miga DE18A TARA RED MAG 00020
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AAI clade 13-3-1
medoid: Alkalispirochaeta americana GCA 900156105 1
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AAI clade 13-4
medoid: GCA 009785215 1
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AAI clade 13-5
medoid: GCF 900215325 1
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AAI clade 13-6
medoid: Treponema medium ATCC 700293 GCA 000413035 1
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AAI clade 13-7
medoid: GCA 017940255 1
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AAI clade 13-1
medoid: Borreliella lanei GCA 014205895 1
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AAI clade 14
medoid: GCA 904390925 1
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AAI clade 15
medoid: GCA 002375985 1
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AAI clade 16
medoid: GCA 003963015 1
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AAI clade 17
medoid: GCA 001771585 1
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AAI clade 18
medoid: GCF 018398895 1
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AAI clade 19
medoid: GCA 001295775 1
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AAI clade 20
medoid: Qipengyuania aquimaris GCA 009827445 1
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AAI clade 21
medoid: GCF 009363535 1
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AAI clade 22
medoid: GCA 904374795 1
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AAI clade 23
medoid: GCA 903955385 1
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AAI clade 24
medoid: GCA 903887975 1
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AAI clade 25
medoid: GCA 902602655 1
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AAI clade 26
medoid: GCA 905235755 1
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AAI clade 27
medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
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AAI clade 28
medoid: GCA 903909555 1
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AAI clade 29
medoid: Marinomonas aquimarina GCA 900089755 1
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AAI clade 30
medoid: GCA 015061955 1
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AAI clade 31
medoid: GCA 000421065 1
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AAI clade 32
medoid: GCA 002438845 1
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AAI clade 33
medoid: GCA 003602665 1
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AAI clade 34
medoid: GCA 910585295 1
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AAI clade 35
medoid: Nocardioides iriomotensis GCA 004168035 1
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AAI clade 36
medoid: GCA 017608235 1
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AAI clade 37
medoid: GCF 004332155 1
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AAI clade 38
medoid: GCA 009712635 1
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AAI clade 39
medoid: GCA 903926605 1
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AAI clade 40
medoid: GCA 017645955 1
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AAI clade 41
medoid: GCA 016793015 1
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AAI clade 42
medoid: GCA 900538305 1
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AAI clade 43
medoid: GCA 001002765 1
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AAI clade 44
medoid: GCA 902559935 1
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AAI clade 45
medoid: GCA 011371455 1
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AAI clade 46
medoid: GCA 000435515 1
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AAI clade 47
medoid: Anaerostipes butyraticus GCA 016586355 1
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AAI clade 48
medoid: GCF 002835935 1
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AAI clade 49
medoid: miga PS19A RaymondF 2016 P20E90 bin 24
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AAI clade 50
medoid: GCA 002338255 1
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AAI clade 51
medoid: Haloprofundus salinisoli GCA 020097815 1
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AAI clade 52
medoid: GCA 900167925 1
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AAI clade 53
medoid: GCA 900550065 1
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AAI clade 54
medoid: GCA 002314915 1
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AAI clade 55
medoid: Rhizorhabdus dicambivorans GCA 002355275 1
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AAI clade 56
medoid: GCA 005882335 1
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AAI clade 57
medoid: GCA 011065225 1
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AAI clade 58
medoid: GCA 016781775 1
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AAI clade 59
medoid: GCA 002362595 1
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AAI clade 60
medoid: GCA 016214555 1
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AAI clade 61
medoid: GCF 014764505 1
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AAI clade 62
medoid: GCA 902623215 1
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AAI clade 63
medoid: GCA 003514205 1
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AAI clade 64
medoid: GCF 009707955 1
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AAI clade 65
medoid: GCF 000348745 1
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AAI clade 66
medoid: GCA 900772425 1
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AAI clade 67
medoid: GCF 003590645 1
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AAI clade 68
medoid: GCF 902506105 1
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AAI clade 69
medoid: GCF 013407275 1
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AAI clade 70
medoid: GCA 015494795 1
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AAI clade 71
medoid: GCA 016709995 1
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AAI clade 72
medoid: GCA 002493965 1
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AAI clade 73
medoid: GCA 009469665 1
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AAI clade 74
medoid: GCA 001799635 1
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AAI clade 75
medoid: GCA 016650235 1
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AAI clade 76
medoid: Ochrovirga pacifica GCA 000220525 2
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AAI clade 77
medoid: GCA 009903855 1
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AAI clade 78
medoid: GCA 019204045 1
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AAI clade 79
medoid: GCA 902783375 1
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AAI clade 80
medoid: GCF 000350105 1
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AAI clade 81
medoid: GCA 903901345 1
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AAI clade 82
medoid: GCA 015075425 1
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AAI clade 83
medoid: GCA 001508835 1
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AAI clade 84
medoid: GCA 017746715 1
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AAI clade 85
medoid: Nocardioides plantarum GCA 006346395 1
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AAI clade 86
medoid: GCA 017438285 1
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AAI clade 87
medoid: GCA 002712945 1
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AAI clade 88
medoid: GCF 002214625 1
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AAI clade 89
medoid: GCA 902773215 1
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AAI clade 90
medoid: GCA 002723385 1
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AAI clade 91
medoid: GCA 019113455 1
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AAI clade 92
medoid: GCA 016286935 1
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AAI clade 93
medoid: GCA 003566775 1