AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
    • AAI clade 8-1 medoid: Sporomusa acidovorans DSM 3132 GCF 002257695 1
    • AAI clade 8-2 medoid: Borreliella burgdorferi GCF 002151505 1
    • AAI clade 8-3 medoid: Eggerthella lenta GCF 003339975 1
    • AAI clade 8-4 medoid: Clostridium carboxidivorans P7 GCF 001038625 1
    • AAI clade 8-5 medoid: Geomonas fuzhouensis GCF 020179575 1
      • AAI clade 8-5-1 medoid: Desulfatibacillum aliphaticivorans DSM 15576 GCF 000429905 1
      • AAI clade 8-5-2 medoid: Desulfobacter hydrogenophilus GCF 003261095 1
      • AAI clade 8-5-3 medoid: Desulfuromonas versatilis GCF 019704135 1
      • AAI clade 8-5-4 medoid: Edaphobacter dinghuensis GCF 014640335 1
      • AAI clade 8-5-5 medoid: Geobacter hydrogenophilus GCF 018501225 1
      • AAI clade 8-5-6 medoid: Geomonas anaerohicana GCF 016458305 1
        • AAI clade 8-5-6-1 medoid: Geomonas anaerohicana GCF 016458305 1
          • AAI clade 8-5-6-1-1 medoid: Geomonas anaerohicana GCF 016458305 1
          • AAI clade 8-5-6-1-2 medoid: Nitrospina watsonii GCF 946900835 1
        • AAI clade 8-5-6-2 medoid: Brevinema andersonii GCF 900112165 1
        • AAI clade 8-5-6-3 medoid: Candidatus Protochlamydia amoebophila UWE25 GCF 000011565 2
        • AAI clade 8-5-6-4 medoid: Dissulfurispira thermophila GCF 014701235 1
        • AAI clade 8-5-6-5 medoid: Geotalea daltonii FRC 32 GCF 000022265 1
      • AAI clade 8-5-7 medoid: Deferribacter desulfuricans SSM1 GCF 000010985 1
      • AAI clade 8-5-8 medoid: Alloacidobacterium dinghuense GCF 014274465 1
      • AAI clade 8-5-9 medoid: Desulfovibrio inopinatus DSM 10711 GCF 000429305 1
      • AAI clade 8-5-10 medoid: Leptospira terpstrae serovar Hualin str. LT 11 33 ATCC 700639 GCF 000332495 1
    • AAI clade 8-6 medoid: Fusobacterium polymorphum GCF 035320945 1
    • AAI clade 8-7 medoid: Argonema antarcticum A004 B2 GCF 023333585 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1