AAI clade 8-4-16 | MiGA Online

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AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
- AAI clade 8-1 medoid: Sporomusa acidovorans DSM 3132 GCF 002257695 1
- AAI clade 8-2 medoid: Borreliella burgdorferi GCF 002151505 1
- AAI clade 8-3 medoid: Eggerthella lenta GCF 003339975 1
- AAI clade 8-4 medoid: Clostridium carboxidivorans P7 GCF 001038625 1
  - AAI clade 8-4-1 medoid: Thermoanaerobacter brockii subsp. finnii Ako 1 GCF 000175295 2
  - AAI clade 8-4-2 medoid: Clostridium sporogenes GCF 000973705 1
  - AAI clade 8-4-3 medoid: Clostridium weizhouense GCF 019431045 1
  - AAI clade 8-4-4 medoid: Acetivibrio straminisolvens JCM 21531 GCF 000521465 1
  - AAI clade 8-4-5 medoid: Clostridium carboxidivorans P7 GCF 001038625 1
  - AAI clade 8-4-6 medoid: Clostridium ganghwense GCF 026735165 1
  - AAI clade 8-4-7 medoid: Clostridium acidisoli DSM 12555 GCF 900176305 1
  - AAI clade 8-4-8 medoid: Tissierella praeacuta DSM 18095 GCF 900128955 1
  - AAI clade 8-4-9 medoid: Acetobacterium dehalogenans DSM 11527 GCF 000472665 1
  - AAI clade 8-4-10 medoid: Acetobacterium paludosum GCF 008086595 1
  - AAI clade 8-4-11 medoid: Amygdalobacter nucleatus GCF 001552885 1
  - AAI clade 8-4-12 medoid: Aristaeella hokkaidonensis GCF 018128945 1
  - AAI clade 8-4-13 medoid: Clostridium formicaceticum GCF 001854185 1
  - AAI clade 8-4-14 medoid: Clostridium estertheticum subsp. estertheticum GCF 001877035 1
  - AAI clade 8-4-15 medoid: Clostridium tetani GCF 000762305 1
  - AAI clade 8-4-16 medoid: Clostridium zeae GCF 017312485 1
    
    AAI clade 8-4-16-1 medoid: Clostridium zeae GCF 017312485 1
    
    AAI clade 8-4-16-2 medoid: Clostridium tarantellae GCF 009295725 1
    
    AAI clade 8-4-16-3 medoid: Clostridium intestinale DSM 6191 GCF 900130055 1
    
    AAI clade 8-4-16-4 medoid: Inconstantimicrobium porci GCF 009696465 1
    
    AAI clade 8-4-16-5 medoid: Oxobacter pfennigii GCF 001317355 1
  - AAI clade 8-4-17 medoid: Clostridium chauvoei GCF 002327185 1
  - AAI clade 8-4-18 medoid: Clostridium caldaquaticum GCF 023806125 1
  - AAI clade 8-4-19 medoid: Eubacterium limosum GCF 000807675 2
  - AAI clade 8-4-20 medoid: Mediannikoviicoccus vaginalis GCF 928097925 1
  - AAI clade 8-4-21 medoid: Alkaliphilus peptidifermentans DSM 18978 GCF 900101495 1
  - AAI clade 8-4-22 medoid: Youngiibacter fragilis 232 1 GCF 000495435 3
  - AAI clade 8-4-23 medoid: Ruminiclostridium papyrosolvens DSM 2782 GCF 000175795 2
  - AAI clade 8-4-24 medoid: Caloranaerobacter azorensis DSM 13643 GCF 900129995 1
  - AAI clade 8-4-25 medoid: Thermoanaerobacterium butyriciformans GCF 017874545 1
  - AAI clade 8-4-26 medoid: Alkalibacter mobilis GCF 015594845 1
  - AAI clade 8-4-27 medoid: Mogibacterium diversum GCF 002998925 1
  - AAI clade 8-4-28 medoid: Sinanaerobacter chloroacetimidivorans GCF 018128545 1
  - AAI clade 8-4-29 medoid: Pumilibacter intestinalis GCF 943193005 1
  - AAI clade 8-4-30 medoid: Inediibacterium massiliense GCF 001282725 1
  - AAI clade 8-4-31 medoid: Geosporobacter subterraneus DSM 17957 GCF 900142145 1
  - AAI clade 8-4-32 medoid: Zongyangia hominis GCF 014385095 1
  - AAI clade 8-4-33 medoid: Baileyella intestinalis GCF 009695865 1
  - AAI clade 8-4-34 medoid: Caldanaerobius fijiensis DSM 17918 GCF 900129075 1
  - AAI clade 8-4-35 medoid: Caldicoprobacter algeriensis GCF 023838525 1
  - AAI clade 8-4-36 medoid: Caloramator australicus RC3 GCF 000297115 1
  - AAI clade 8-4-37 medoid: Caloramator proteoclasticus DSM 10124 GCF 900129265 1
  - AAI clade 8-4-38 medoid: Candidatus Apopatousia equi GCA 018064325 1
  - AAI clade 8-4-39 medoid: Candidatus Caballimonas caccae GCA 018065575 1
  - AAI clade 8-4-40 medoid: Clostridium lundense DSM 17049 GCF 000619945 1
  - AAI clade 8-4-41 medoid: Clostridium polynesiense GCF 000820705 1
  - AAI clade 8-4-42 medoid: Clostridium senegalense JC122 GCF 000285575 1
  - AAI clade 8-4-43 medoid: Sedimentibacter saalensis GCF 007830175 1
  - AAI clade 8-4-44 medoid: Eubacterium barkeri GCF 900107125 1
  - AAI clade 8-4-45 medoid: Ezakiella massiliensis GCF 900120165 1
  - AAI clade 8-4-46 medoid: Fenollaria massiliensis GCF 000312505 2
  - AAI clade 8-4-47 medoid: Gehongia tenuis GCF 014384795 1
  - AAI clade 8-4-48 medoid: Kallipyga gabonensis GCF 001286805 1
  - AAI clade 8-4-49 medoid: Murdochiella massiliensis GCF 900059565 1
  - AAI clade 8-4-50 medoid: Lutispora saccharofermentans GCF 024363565 1
  - AAI clade 8-4-51 medoid: Maledivibacter halophilus GCF 900167445 1
  - AAI clade 8-4-52 medoid: Candidatus Improbicoccus pseudotrichonymphae GCA 036322855 1
  - AAI clade 8-4-53 medoid: Candidatus Paraimprobicoccus trichonymphae GCA 036322875 1
- AAI clade 8-5 medoid: Geomonas fuzhouensis GCF 020179575 1
- AAI clade 8-6 medoid: Fusobacterium polymorphum GCF 035320945 1
- AAI clade 8-7 medoid: Argonema antarcticum A004 B2 GCF 023333585 1
AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
AAI clade 17 medoid: Dorea hominis GCF 014287705 1
AAI clade 18 medoid: Massilia putida GCF 001941825 1
AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1

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