AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
    • AAI clade 8-1 medoid: Sporomusa acidovorans DSM 3132 GCF 002257695 1
      • AAI clade 8-1-1 medoid: Chlamydia psittaci 6BC GCF 000191925 1
      • AAI clade 8-1-2 medoid: Caldicellulosiruptor hydrothermalis 108 GCF 000166355 1
      • AAI clade 8-1-3 medoid: Veillonella dispar GCF 900637515 1
      • AAI clade 8-1-4 medoid: Brachyspira hyodysenteriae ATCC 27164 GCF 001676785 2
      • AAI clade 8-1-5 medoid: Dethiosulfovibrio marinus GCF 021568875 1
      • AAI clade 8-1-6 medoid: Pectinatus haikarae GCF 030813505 1
      • AAI clade 8-1-7 medoid: Megasphaera elsdenii DSM 20460 GCF 000283495 2
      • AAI clade 8-1-8 medoid: Sporomusa silvacetica DSM 10669 GCF 002257705 1
      • AAI clade 8-1-9 medoid: Acidaminococcus fermentans DSM 20731 GCF 000025305 1
      • AAI clade 8-1-10 medoid: Propionispora hippei DSM 15287 GCF 900141835 1
        • AAI clade 8-1-10-1 medoid: Anaeroarcus burkinensis DSM 6283 GCF 000430605 1
        • AAI clade 8-1-10-2 medoid: Propionispora vibrioides GCF 900110485 1
        • AAI clade 8-1-10-3 medoid: Acetonema longum DSM 6540 GCF 000219125 1
        • AAI clade 8-1-10-4 medoid: Anaerospora hongkongensis GCF 004339805 1
        • AAI clade 8-1-10-5 medoid: Anaerosporomusa subterranea GCF 001611555 1
        • AAI clade 8-1-10-6 medoid: Endomicrobium proavitum GCF 001027545 1
        • AAI clade 8-1-10-7 medoid: Selenobaculum gbiensis GCF 030273445 1
        • AAI clade 8-1-10-8 medoid: Pelorhabdus rhamnosifermentans GCF 018835585 1
        • AAI clade 8-1-10-9 medoid: Thermosinus carboxydivorans Nor1 GCF 000169155 1
        • AAI clade 8-1-10-10 medoid: Succinispira mobilis DSM 6222 GCF 000384135 1
      • AAI clade 8-1-11 medoid: Mitsuokella multacida DSM 20544 GCF 000155955 1
      • AAI clade 8-1-12 medoid: Desulfoscipio gibsoniae DSM 7213 GCF 000233715 2
      • AAI clade 8-1-13 medoid: Desulfitobacterium chlororespirans DSM 11544 GCF 900143285 1
      • AAI clade 8-1-14 medoid: Desulforamulus putei DSM 12395 GCF 900129195 1
      • AAI clade 8-1-15 medoid: Dialister succinatiphilus YIT 11850 GCF 000242435 1
      • AAI clade 8-1-16 medoid: Heliomicrobium undosum GCF 009877425 1
      • AAI clade 8-1-17 medoid: Veillonella seminalis GCF 003992065 1
      • AAI clade 8-1-18 medoid: Tepidanaerobacter acetatoxydans Re1 GCF 000213235 1
      • AAI clade 8-1-19 medoid: Halanaerobium kushneri GCF 900156285 1
      • AAI clade 8-1-20 medoid: Anaerobranca gottschalkii DSM 13577 GCF 900111575 1
      • AAI clade 8-1-21 medoid: Thermosipho atlanticus DSM 15807 GCF 900129985 1
      • AAI clade 8-1-22 medoid: Selenomonas infelix ATCC 43532 GCF 000234095 1
      • AAI clade 8-1-23 medoid: Desulfosporosinus hippei DSM 8344 GCF 900100785 1
      • AAI clade 8-1-24 medoid: Pelotomaculum isophthalicicum JI GCF 029478095 1
      • AAI clade 8-1-25 medoid: Marinitoga aeolica GCF 029910535 1
      • AAI clade 8-1-26 medoid: Pelosinus baikalensis GCF 020819555 1
      • AAI clade 8-1-27 medoid: Pyramidobacter piscolens W5455 GCF 000177335 1
      • AAI clade 8-1-28 medoid: Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 GCF 000014725 1
      • AAI clade 8-1-29 medoid: Thermodesulfobium acidiphilum GCF 003057965 1
    • AAI clade 8-2 medoid: Borreliella burgdorferi GCF 002151505 1
    • AAI clade 8-3 medoid: Eggerthella lenta GCF 003339975 1
    • AAI clade 8-4 medoid: Clostridium carboxidivorans P7 GCF 001038625 1
    • AAI clade 8-5 medoid: Geomonas fuzhouensis GCF 020179575 1
    • AAI clade 8-6 medoid: Fusobacterium polymorphum GCF 035320945 1
    • AAI clade 8-7 medoid: Argonema antarcticum A004 B2 GCF 023333585 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1