AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 32-1
medoid: Corynebacterium ciconiae DSM 44920 GCF 000372385 1
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AAI clade 32-2
medoid: Glycomyces algeriensis GCF 027622855 1
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AAI clade 32-3
medoid: Glycomyces tenuis DSM 44171 GCF 000427885 1
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AAI clade 32-4
medoid: Glycomyces terrestris GCF 003933745 1
6 datasets: Glycomyces albidus GCF 009451885 1 (AAI: 83.26%), Glycomyces amatae GCF 020991375 1 (AAI: 76.87%), Glycomyces artemisiae GCF 003002955 1 (AAI: 84.25%), Glycomyces dulcitolivorans GCF 003265355 1 (AAI: 82.91%), Glycomyces sambucus GCF 900102815 1 (AAI: 83.94%), and Glycomyces terrestris GCF 003933745 1 (AAI: 100.0%)
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AAI clade 32-5
medoid: Glycomyces buryatensis GCF 004912275 1
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AAI clade 32-6
medoid: Glycomyces xiaoerkulensis GCF 002798405 1
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AAI clade 32-7
medoid: Haloglycomyces albus DSM 45210 GCF 000527155 1
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AAI clade 32-8
medoid: Natronoglycomyces albus GCF 016925535 1
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AAI clade 32-1
medoid: Corynebacterium ciconiae DSM 44920 GCF 000372385 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1