AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
    • AAI clade 31-1 medoid: Candidatus Amphrikana amoebophyrae GCA 030408475 1
    • AAI clade 31-2 medoid: Edaphobacter acidisoli GCF 014642855 1
    • AAI clade 31-3 medoid: Frateuria soli GCF 021117385 1
    • AAI clade 31-4 medoid: Luteimonas colneyensis GCF 014836665 1
    • AAI clade 31-5 medoid: Lysobacter dokdonensis DS 58 GCF 000770795 1
    • AAI clade 31-6 medoid: Lysobacter luteus GCF 907164845 1
    • AAI clade 31-7 medoid: Oleiagrimonas soli GCF 000761445 1
    • AAI clade 31-8 medoid: Pseudodesulfovibrio mercurii GCF 000189295 2
    • AAI clade 31-9 medoid: Thermomonas haemolytica GCF 004346265 1
    • AAI clade 31-10 medoid: Lysobacter soli GCF 003382285 1
      • AAI clade 31-10-1 medoid: Lysobacter soli GCF 003382285 1
        • AAI clade 31-10-1-1 medoid: Lysobacter soli GCF 003382285 1
        • AAI clade 31-10-1-2 medoid: Vulcaniibacterium thermophilum GCF 007923255 1
        • AAI clade 31-10-1-3 medoid: Coralloluteibacterium stylophorae GCF 018122625 2
        • AAI clade 31-10-1-4 medoid: Lysobacter bugurensis GCF 014652095 1
        • AAI clade 31-10-1-5 medoid: Lysobacter solisilvae GCF 016613535 2
      • AAI clade 31-10-2 medoid: Lysobacter daejeonensis GH1 9 GCF 000768355 1
    • AAI clade 31-11 medoid: Wenzhouxiangella marina GCF 001187785 1
    • AAI clade 31-12 medoid: Arenimonas donghaensis DSM 18148 HO3 R19 GCF 000743535 1
    • AAI clade 31-13 medoid: Desulfomicrobium orale DSM 12838 GCF 001553625 1
    • AAI clade 31-14 medoid: Nitratidesulfovibrio liaohensis GCF 011682075 1
    • AAI clade 31-15 medoid: Salidesulfovibrio brasiliensis JCM 12178 GCF 001311825 1
    • AAI clade 31-16 medoid: Dokdonella fugitiva GCF 004342425 1
    • AAI clade 31-17 medoid: Estrella lausannensis GCF 900000175 1
    • AAI clade 31-18 medoid: Silvanigrella paludirubra GCF 009208775 1
    • AAI clade 31-19 medoid: Luteimonas endophytica GCF 029887875 1
    • AAI clade 31-20 medoid: Luteimonas viscosa GCF 008244685 1
    • AAI clade 31-21 medoid: Luteimonas galliterrae GCF 023374055 1
    • AAI clade 31-22 medoid: Luteimonas chenhongjianii GCF 002327105 1
    • AAI clade 31-23 medoid: Lysobacter sedimenti GCF 022808325 1
    • AAI clade 31-24 medoid: Lysobacter spongiae GCF 014145325 1
    • AAI clade 31-25 medoid: Lysobacter avium GCF 015209745 1
    • AAI clade 31-26 medoid: Lysobacter antibioticus GCF 001442535 1
    • AAI clade 31-27 medoid: Lysobacter segetis GCF 004359965 1
    • AAI clade 31-28 medoid: Lysobacter oculi GCF 003293695 1
    • AAI clade 31-29 medoid: Marinicella gelatinilytica GCF 026410405 1
    • AAI clade 31-30 medoid: Marinicella sediminis GCF 002000055 1
    • AAI clade 31-31 medoid: Marinihelvus fidelis GCF 008725655 1
    • AAI clade 31-32 medoid: Rhodanobacter denitrificans GCF 000230695 2
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1