AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
    • AAI clade 27-1 medoid: Sphingobium indicum GCF 013408165 1
    • AAI clade 27-2 medoid: Sphingopyxis chilensis GCF 035930445 1
    • AAI clade 27-3 medoid: Polymorphobacter fuscus GCF 009372075 1
    • AAI clade 27-4 medoid: Iodidimonas gelatinilytica GCF 008579125 1
    • AAI clade 27-5 medoid: Rickettsia asembonensis GCF 000828125 2
    • AAI clade 27-6 medoid: Sphingomonas bisphenolicum GCF 024349785 1
    • AAI clade 27-7 medoid: Sphingomonas liriopis GCF 024211255 1
    • AAI clade 27-8 medoid: Sphingomonas yabuuchiae GCF 014199595 1
    • AAI clade 27-9 medoid: Sphingomonas tagetis GCF 024211275 1
    • AAI clade 27-10 medoid: Sphingomonas prati GCF 014643515 1
    • AAI clade 27-11 medoid: Altererythrobacter ishigakiensis GCF 001663155 1
    • AAI clade 27-12 medoid: Alteriqipengyuania lutimaris GCF 003363135 1
    • AAI clade 27-13 medoid: Aurantiacibacter odishensis GCF 003605195 1
    • AAI clade 27-14 medoid: Novosphingobium mathurense GCF 900168325 1
      • AAI clade 27-14-1 medoid: Caenibius tardaugens NBRC 16725 GCF 000466945 1
      • AAI clade 27-14-2 medoid: Novosphingobium marinum GCF 013408095 1
      • AAI clade 27-14-3 medoid: Novosphingobium mathurense GCF 900168325 1
      • AAI clade 27-14-4 medoid: Novosphingobium album ex Liu et al 2023 GCF 029076845 1
      • AAI clade 27-14-5 medoid: Novosphingobium aquimarinum GCF 009746585 1
      • AAI clade 27-14-6 medoid: Novosphingobium clariflavum GCF 026420865 1
      • AAI clade 27-14-7 medoid: Novosphingobium colocasiae GCF 014652555 1
      • AAI clade 27-14-8 medoid: Novosphingobium endophyticum GCF 014640675 1
      • AAI clade 27-14-9 medoid: Novosphingobium fluoreni GCF 014196615 1
      • AAI clade 27-14-10 medoid: Altererythrobacter fulvus GCF 037154085 1
    • AAI clade 27-15 medoid: Altericroceibacterium spongiae GCF 003610805 1
    • AAI clade 27-16 medoid: Croceicoccus gelatinilyticus GCF 018398395 1
    • AAI clade 27-17 medoid: Erythrobacter colymbi GCF 002155685 1
    • AAI clade 27-18 medoid: Erythrobacter rubeus GCF 014705715 1
    • AAI clade 27-19 medoid: Novosphingobium jiangmenense GCF 015694345 1
    • AAI clade 27-20 medoid: Novosphingobium pokkalii GCF 014652855 1
    • AAI clade 27-21 medoid: Pacificimonas flava GCF 000342165 1
    • AAI clade 27-22 medoid: Pelagerythrobacter aerophilus GCF 003581645 1
    • AAI clade 27-23 medoid: Pontixanthobacter aestiaquae GCF 009827455 1
    • AAI clade 27-24 medoid: Qipengyuania mesophila GCF 019711655 1
    • AAI clade 27-25 medoid: Sphingomicrobium aestuariivivum GCF 022953075 1
    • AAI clade 27-26 medoid: Sphingomicrobium flavum GCF 024721605 1
    • AAI clade 27-27 medoid: Sphingomonas ginsenosidimutans GCF 002374835 1
    • AAI clade 27-28 medoid: Sphingomonas endolithica GCF 025231525 1
    • AAI clade 27-29 medoid: Sphingomonas kaistensis GCF 011927725 1
    • AAI clade 27-30 medoid: Sphingomonas panni GCF 022664435 1
    • AAI clade 27-31 medoid: Sphingomonas echinoides ATCC 14820 GCF 000241465 1
    • AAI clade 27-32 medoid: Sphingomonas hankyongi GCF 023516575 1
    • AAI clade 27-33 medoid: Sphingomonas psychrotolerans GCF 032334595 1
    • AAI clade 27-34 medoid: Stakelama flava GCF 019351405 1
    • AAI clade 27-35 medoid: Tsuneonella dongtanensis GCF 001698205 1
    • AAI clade 27-36 medoid: Zymomonas mobilis subsp. pomaceae ATCC 29192 GCF 000218875 1
    • AAI clade 27-37 medoid: Sphingosinicella flava GCF 016025255 1
    • AAI clade 27-38 medoid: Aurantiacibacter xanthus GCF 003584015 1
    • AAI clade 27-39 medoid: Alteripontixanthobacter muriae GCF 013336795 1
    • AAI clade 27-40 medoid: Qipengyuania gelatinilytica GCF 019711315 1
    • AAI clade 27-41 medoid: Alteriqipengyuania halimionae GCF 009827575 1
    • AAI clade 27-42 medoid: Anaeromyxobacter paludicola GCF 023169965 1
    • AAI clade 27-43 medoid: Sphingomonas cavernae GCF 003590775 1
    • AAI clade 27-44 medoid: Sphingomonas fennica GCF 003034225 1
    • AAI clade 27-45 medoid: Sphingomonas ursincola GCF 013607875 1
    • AAI clade 27-46 medoid: Croceibacterium ferulae GCF 003660445 1
    • AAI clade 27-47 medoid: Kordiimonas aestuarii GCF 025574465 1
    • AAI clade 27-48 medoid: Fundidesulfovibrio terrae GCF 022808915 1
    • AAI clade 27-49 medoid: Govania unica GCF 027920805 1
    • AAI clade 27-50 medoid: Sphingosinicella microcystinivorans GCF 003634215 1
    • AAI clade 27-51 medoid: Sphingomonas citri GCF 019429485 1
    • AAI clade 27-52 medoid: Novosphingobium aerophilum GCF 014230305 1
    • AAI clade 27-53 medoid: Novosphingobium naphthalenivorans NBRC 102051 GCF 001590985 1
    • AAI clade 27-54 medoid: Novosphingobium decolorationis GCF 018417475 1
    • AAI clade 27-55 medoid: Novosphingobium resinovorum GCF 027922145 1
    • AAI clade 27-56 medoid: Novosphingobium huizhouense GCF 020179475 1
    • AAI clade 27-57 medoid: Novosphingobium humi GCF 028607105 1
    • AAI clade 27-58 medoid: Novosphingobium rosa NBRC 15208 GCF 001598555 1
    • AAI clade 27-59 medoid: Novosphingopyxis baekryungensis DSM 16222 GCF 000420305 1
    • AAI clade 27-60 medoid: Paraliomyxa miuraensis GCF 026337845 1
    • AAI clade 27-61 medoid: Parasphingopyxis algicola GCF 013378075 1
    • AAI clade 27-62 medoid: Parasphingorhabdus litoris DSM 22379 GCF 020906275 1
    • AAI clade 27-63 medoid: Pseudobdellovibrio exovorus JSS GCF 000348725 1
    • AAI clade 27-64 medoid: Qipengyuania nanhaisediminis GCF 900115585 1
    • AAI clade 27-65 medoid: Rhizorhabdus histidinilytica GCF 900167915 1
    • AAI clade 27-66 medoid: Sphingobium arseniciresistens GCF 029167225 1
    • AAI clade 27-67 medoid: Sandaracinobacteroides sayramensis GCF 022014495 1
    • AAI clade 27-68 medoid: Sandarakinorhabdus oryzae GCF 009733735 1
    • AAI clade 27-69 medoid: Sphingobium xanthum GCF 019737615 1
    • AAI clade 27-70 medoid: Sphingomonas oryzagri GCF 029906645 1
    • AAI clade 27-71 medoid: Sphingomonas albertensis GCF 014358075 1
    • AAI clade 27-72 medoid: Sphingomonas caseinilyticus GCF 023516455 1
    • AAI clade 27-73 medoid: Sphingomonas mali NBRC 15500 GCF 001598415 1
    • AAI clade 27-74 medoid: Sphingomonas azotifigens NBRC 15497 GCF 002091475 1
    • AAI clade 27-75 medoid: Sphingomonas spermidinifaciens GCF 002351485 1
    • AAI clade 27-76 medoid: Sphingomonas changbaiensis NBRC 104936 GCF 000974765 1
    • AAI clade 27-77 medoid: Sphingomonas citricola GCF 019429535 1
    • AAI clade 27-78 medoid: Sphingomonas dokdonensis GCF 002197685 1
    • AAI clade 27-79 medoid: Sphingomonas panacis GCF 001717955 1
    • AAI clade 27-80 medoid: Sphingorhabdus lacus GCF 009768975 1
    • AAI clade 27-81 medoid: Sphingosinithalassobacter portus GCF 003171655 1
    • AAI clade 27-82 medoid: Tsuneonella suprasediminis GCF 003605755 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1