AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
    • AAI clade 24-1 medoid: Avibacterium gallinarum GCF 900454485 1
    • AAI clade 24-2 medoid: Haemophilus haemolyticus GCF 001679045 1
    • AAI clade 24-3 medoid: Actinobacillus equuli GCF 900636745 1
    • AAI clade 24-4 medoid: Haemophilus paraphrohaemolyticus GCF 002015045 1
    • AAI clade 24-5 medoid: Pasteurella dagmatis ATCC 43325 GCF 000163475 1
    • AAI clade 24-6 medoid: Aggregatibacter aphrophilus ATCC 33389 GCF 000226495 2
    • AAI clade 24-7 medoid: Basfia succiniciproducens GCF 900101275 1
    • AAI clade 24-8 medoid: Gallibacterium salpingitidis GCF 001678495 1
    • AAI clade 24-9 medoid: Actinobacillus porcinus GCF 900773985 1
    • AAI clade 24-10 medoid: Pasteurella testudinis DSM 23072 GCF 019633665 1
    • AAI clade 24-11 medoid: Caviibacterium pharyngocola GCF 002795405 1
    • AAI clade 24-12 medoid: Bisgaardia hudsonensis GCF 004345785 1
    • AAI clade 24-13 medoid: Canicola haemoglobinophilus GCF 002015075 1
    • AAI clade 24-14 medoid: Glaesserella australis GCF 003260095 1
    • AAI clade 24-15 medoid: Mannheimia bovis GCF 014541205 1
    • AAI clade 24-16 medoid: Phocoenobacter uteri GCF 900454895 1
    • AAI clade 24-17 medoid: Rodentibacter mrazii GCF 001998825 1
    • AAI clade 24-18 medoid: Anaerobiospirillum succiniciproducens DSM 6400 GCF 000482845 1
    • AAI clade 24-19 medoid: Anaerobiospirillum thomasii GCF 900445255 1
    • AAI clade 24-20 medoid: Conservatibacter flavescens GCF 002795425 1
    • AAI clade 24-21 medoid: Dichelobacter nodosus GCF 001263335 1
    • AAI clade 24-22 medoid: Psittacicella gerlachiana GCF 003585965 1
    • AAI clade 24-23 medoid: Psittacicella hinzii GCF 003585935 1
      1 dataset: Psittacicella hinzii GCF 003585935 1 (AAI: 100.0%)
    • AAI clade 24-24 medoid: Rodentibacter rarus GCF 001998965 1
    • AAI clade 24-25 medoid: Ruminobacter amylophilus GCF 900115655 1
    • AAI clade 24-26 medoid: Spirabiliibacterium pneumoniae GCF 014884995 1
    • AAI clade 24-27 medoid: Succinatimonas hippei YIT 12066 GCF 000188195 1
    • AAI clade 24-28 medoid: Succinimonas amylolytica DSM 2873 GCF 000378405 1
    • AAI clade 24-29 medoid: Succinivibrio dextrinosolvens DSM 3072 GCF 900167015 1
    • AAI clade 24-30 medoid: Succinivibrio faecicola GCF 019448115 1
    • AAI clade 24-31 medoid: Volucribacter amazonae GCF 029783845 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1