AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
• AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 2-1 medoid: Ochrobactrum gambitense gb CP098020
  • AAI clade 2-2 medoid: Roseibium algicola GCF 001999245 1
    • AAI clade 2-2-1 medoid: Rickettsia monacensis GCF 000499665 2
    • AAI clade 2-2-2 medoid: Aquisalinus flavus GCF 022559625 1
    • AAI clade 2-2-3 medoid: Pleomorphomonas koreensis DSM 23070 GCF 000425185 1
    • AAI clade 2-2-4 medoid: Roseibium algicola GCF 001999245 1
    • AAI clade 2-2-5 medoid: Thalassospira tepidiphila GCF 011927685 1
    • AAI clade 2-2-6 medoid: Pannonibacter indicus GCF 001418225 1
    • AAI clade 2-2-7 medoid: Methyloceanibacter caenitepidi GCF 000828475 1
    • AAI clade 2-2-8 medoid: Kaistia defluvii GCF 026343955 1
    • AAI clade 2-2-9 medoid: Kordiimonas lipolytica GCF 001550065 1
    • AAI clade 2-2-10 medoid: Pseudovibrio brasiliensis GCF 001941685 1
      • AAI clade 2-2-10-1 medoid: Pseudovibrio axinellae GCF 001623255 1
      • AAI clade 2-2-10-2 medoid: Pseudovibrio brasiliensis GCF 001941685 1
      • AAI clade 2-2-10-3 medoid: Pseudovibrio exalbescens DSM 16456 GCF 000422785 1
      • AAI clade 2-2-10-4 medoid: Pseudovibrio flavus GCF 009711345 1
        1 dataset: Pseudovibrio flavus GCF 009711345 1 (AAI: 100.0%)
      • AAI clade 2-2-10-5 medoid: Pseudovibrio hongkongensis GCF 001561995 1
      • AAI clade 2-2-10-6 medoid: Pseudovibrio stylochi GCF 001562055 1
    • AAI clade 2-2-11 medoid: Sneathiella chungangensis GCF 009882935 1
    • AAI clade 2-2-12 medoid: Prosthecodimorpha staleyi GCF 018729455 1
    • AAI clade 2-2-13 medoid: Candidatus Enterousia onthequi GCA 018064365 1
    • AAI clade 2-2-14 medoid: Nisaea nitritireducens GCF 014904795 1
    • AAI clade 2-2-15 medoid: Cohaesibacter marisflavi GCF 900115225 1
  • AAI clade 2-3 medoid: Rhizobium anhuiense GCF 003985145 1
  • AAI clade 2-4 medoid: Bartonella elizabethae F9251 ATCC 49927 GCF 000518165 1
  • AAI clade 2-5 medoid: Bradyrhizobium huanghuaihaiense GCF 007830635 1
  • AAI clade 2-6 medoid: Sinorhizobium chiapasense GCF 036488675 1
  • AAI clade 2-7 medoid: Acetobacter cerevisiae DSM 14362 GCF 025996195 1
  • AAI clade 2-8 medoid: Mesorhizobium japonicum MAFF 303099 GCF 000009625 1
  • AAI clade 2-9 medoid: Methylobacterium radiotolerans GCF 007991055 1
  • AAI clade 2-10 medoid: Microvirga lotononidis GCF 000262405 1
  • AAI clade 2-11 medoid: Devosia salina GCF 019504385 1
• AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
• AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
• AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
• AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
• AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
• AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
• AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
• AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
• AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
• AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
• AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
• AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
• AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
• AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
• AAI clade 17 medoid: Dorea hominis GCF 014287705 1
• AAI clade 18 medoid: Massilia putida GCF 001941825 1
• AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
• AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
• AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
• AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
• AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
• AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
• AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
• AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
• AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
• AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
• AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
• AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
• AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
• AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
• AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
• AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1