AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 19-1
medoid: Arthrobacter celericrescens GCF 003614925 1
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AAI clade 19-2
medoid: Oerskovia gallyi GCF 014836745 1
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AAI clade 19-3
medoid: Clavibacter phaseoli GCF 021923065 1
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AAI clade 19-4
medoid: Agromyces ramosus GCF 004216665 1
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AAI clade 19-5
medoid: Intrasporangium flavum GCF 001956915 1
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AAI clade 19-6
medoid: Brevibacterium sediminis GCF 013623905 1
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AAI clade 19-7
medoid: Cryobacterium glaciale GCF 004402535 1
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AAI clade 19-7-1
medoid: Cryobacterium glaciale GCF 004402535 1
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AAI clade 19-7-1-1
medoid: Cryobacterium levicorallinum GCF 900113585 1
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AAI clade 19-7-1-2
medoid: Cryobacterium flavum GCF 004402625 1
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AAI clade 19-7-1-3
medoid: Cryobacterium glaciale GCF 004402535 1
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AAI clade 19-7-1-4
medoid: Cryobacterium psychrophilum GCF 004365915 1
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AAI clade 19-7-1-5
medoid: Cryobacterium roopkundense GCF 000764165 1
1 dataset: Cryobacterium roopkundense GCF 000764165 1 (AAI: 100.0%)
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AAI clade 19-7-1-6
medoid: Cryobacterium aureum GCF 002954245 1
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AAI clade 19-7-1-7
medoid: Cryobacterium melibiosiphilum GCF 003602235 1
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AAI clade 19-7-1-8
medoid: Cryobacterium gelidum GCF 004403985 1
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AAI clade 19-7-1-9
medoid: Cryobacterium serini GCF 004404025 1
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AAI clade 19-7-1-1
medoid: Cryobacterium levicorallinum GCF 900113585 1
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AAI clade 19-7-2
medoid: Rhodoglobus vestalii GCF 006788895 1
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AAI clade 19-7-3
medoid: Cryobacterium mannosilyticum GCF 004402705 1
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AAI clade 19-7-4
medoid: Cryobacterium tagatosivorans GCF 004402215 1
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AAI clade 19-7-5
medoid: Conyzicola lurida GCF 014204935 1
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AAI clade 19-7-6
medoid: Subtercola lobariae GCF 014640255 1
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AAI clade 19-7-7
medoid: Agreia bicolorata GCF 000938265 1
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AAI clade 19-7-8
medoid: Cryobacterium zongtaii GCF 002909375 1
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AAI clade 19-7-9
medoid: Cryobacterium cheniae GCF 004403395 1
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AAI clade 19-7-1
medoid: Cryobacterium glaciale GCF 004402535 1
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AAI clade 19-8
medoid: Microbacterium hibisci GCF 015278255 1
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AAI clade 19-9
medoid: Microbacterium oxydans GCF 006540085 1
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AAI clade 19-10
medoid: Cellulomonas dongxiuzhuiae GCF 017581985 1
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AAI clade 19-11
medoid: Demequina silvatica GCF 000971215 1
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AAI clade 19-12
medoid: Leucobacter chironomi DSM 19883 GCF 000421845 1
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AAI clade 19-1
medoid: Arthrobacter celericrescens GCF 003614925 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1