AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
    • AAI clade 15-1 medoid: Rhodobacter kunshanensis GCF 011059185 1
    • AAI clade 15-2 medoid: Salipiger pentaromativorans GCF 024721115 1
    • AAI clade 15-3 medoid: Paracoccus versutus GCF 003387045 1
    • AAI clade 15-4 medoid: Ruegeria intermedia GCF 900129345 1
    • AAI clade 15-5 medoid: Phaeobacter piscinae GCF 002407245 1
    • AAI clade 15-6 medoid: Roseovarius marisflavi GCF 900142625 1
    • AAI clade 15-7 medoid: Limimaricola variabilis GCF 014195545 1
      • AAI clade 15-7-1 medoid: Wenxinia marina GCF 014645075 1
      • AAI clade 15-7-2 medoid: Limimaricola soesokkakensis GCF 003014435 1
      • AAI clade 15-7-3 medoid: Pelagovum pacificum GCF 006363825 1
      • AAI clade 15-7-4 medoid: Yoonia rosea GCF 900156505 1
      • AAI clade 15-7-5 medoid: Amaricoccus macauensis GCF 014201905 1
      • AAI clade 15-7-6 medoid: Loktanella atrilutea GCF 900128995 1
      • AAI clade 15-7-7 medoid: Marivivens donghaensis GCF 030410045 1
        3 datasets: Marivivens aquimaris GCF 015220045 1 (AAI: 67.1%), Marivivens donghaensis GCF 030410045 1 (AAI: 100.0%), and Marivivens niveibacter GCF 002150005 2 (AAI: 69.35%)
      • AAI clade 15-7-8 medoid: Palleronia aestuarii GCF 003253995 1
      • AAI clade 15-7-9 medoid: Rubellimicrobium arenae GCF 017916295 1
    • AAI clade 15-8 medoid: Thioclava marina GCF 002020135 1
    • AAI clade 15-9 medoid: Litoreibacter halocynthiae GCF 004365635 1
    • AAI clade 15-10 medoid: Paracoccus fontiphilus GCF 017356265 1
    • AAI clade 15-11 medoid: Sulfitobacter dubius GCF 900113435 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1