AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
    • AAI clade 15-1 medoid: Rhodobacter kunshanensis GCF 011059185 1
    • AAI clade 15-2 medoid: Salipiger pentaromativorans GCF 024721115 1
    • AAI clade 15-3 medoid: Paracoccus versutus GCF 003387045 1
    • AAI clade 15-4 medoid: Ruegeria intermedia GCF 900129345 1
    • AAI clade 15-5 medoid: Phaeobacter piscinae GCF 002407245 1
      • AAI clade 15-5-1 medoid: Tritonibacter scottomollicae GCF 003003215 1
      • AAI clade 15-5-2 medoid: Nereida ignava GCF 001049735 1
      • AAI clade 15-5-3 medoid: Phaeobacter piscinae GCF 002407245 1
      • AAI clade 15-5-4 medoid: Thalassobacter stenotrophicus DSM 16310 GCF 900141945 1
      • AAI clade 15-5-5 medoid: Tritonibacter multivorans GCF 900112515 1
      • AAI clade 15-5-6 medoid: Tritonibacter litoralis GCF 009496005 1
      • AAI clade 15-5-7 medoid: Zongyanglinia marina GCF 005771405 1
      • AAI clade 15-5-8 medoid: Planktotalea frisia GCF 001890925 1
        1 dataset: Planktotalea frisia GCF 001890925 1 (AAI: 100.0%)
      • AAI clade 15-5-9 medoid: Shimia marina GCF 001458175 1
      • AAI clade 15-5-10 medoid: Aliiroseovarius lamellibrachiae GCF 018599245 1
      • AAI clade 15-5-11 medoid: Amylibacter cionae GCF 014643735 1
      • AAI clade 15-5-12 medoid: Amylibacter kogurei GCF 002742285 1
      • AAI clade 15-5-13 medoid: Amylibacter marinus GCF 030160015 1
      • AAI clade 15-5-14 medoid: Cochlodiniinecator piscidefendens GCF 011326755 1
      • AAI clade 15-5-15 medoid: Cognatishimia activa GCF 001458335 1
      • AAI clade 15-5-16 medoid: Falsihalocynthiibacter arcticus GCF 000812665 2
      • AAI clade 15-5-17 medoid: Gymnodinialimonas ceratoperidinii GCF 019297855 1
      • AAI clade 15-5-18 medoid: Halocynthiibacter namhaensis GCF 000812685 1
      • AAI clade 15-5-19 medoid: Jannaschia faecimaris GCF 900107415 1
      • AAI clade 15-5-20 medoid: Jannaschia pohangensis GCF 900113875 1
      • AAI clade 15-5-21 medoid: Jannaschia seosinensis GCF 001408515 1
      • AAI clade 15-5-22 medoid: Leisingera daeponensis DSM 23529 GCF 000473145 1
      • AAI clade 15-5-23 medoid: Leisingera methylohalidivorans DSM 14336 GCF 000511355 1
      • AAI clade 15-5-24 medoid: Litorivita pollutaquae GCF 003205515 1
      • AAI clade 15-5-25 medoid: Oceaniglobus indicus GCF 002751875 1
      • AAI clade 15-5-26 medoid: Pacificibacter marinus GCF 900109555 1
      • AAI clade 15-5-27 medoid: Pacificitalea manganoxidans GCF 002504165 1
      • AAI clade 15-5-28 medoid: Pseudooceanicola algae GCF 003590145 2
      • AAI clade 15-5-29 medoid: Pseudooctadecabacter jejudonensis GCF 900172275 1
      • AAI clade 15-5-30 medoid: Pseudophaeobacter flagellatus GCF 021228235 1
      • AAI clade 15-5-31 medoid: Sedimentitalea nanhaiensis DSM 24252 GCF 000473225 1
      • AAI clade 15-5-32 medoid: Shimia sediminis GCF 003990645 1
      • AAI clade 15-5-33 medoid: Shimia litoralis GCF 005518135 1
      • AAI clade 15-5-34 medoid: Sulfitobacter algicola GCF 013315265 1
      • AAI clade 15-5-35 medoid: Thalassorhabdomicrobium marinisediminis GCF 003072065 1
    • AAI clade 15-6 medoid: Roseovarius marisflavi GCF 900142625 1
    • AAI clade 15-7 medoid: Limimaricola variabilis GCF 014195545 1
    • AAI clade 15-8 medoid: Thioclava marina GCF 002020135 1
    • AAI clade 15-9 medoid: Litoreibacter halocynthiae GCF 004365635 1
    • AAI clade 15-10 medoid: Paracoccus fontiphilus GCF 017356265 1
    • AAI clade 15-11 medoid: Sulfitobacter dubius GCF 900113435 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1