AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 15-1
medoid: Rhodobacter kunshanensis GCF 011059185 1
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AAI clade 15-2
medoid: Salipiger pentaromativorans GCF 024721115 1
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AAI clade 15-3
medoid: Paracoccus versutus GCF 003387045 1
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AAI clade 15-4
medoid: Ruegeria intermedia GCF 900129345 1
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AAI clade 15-5
medoid: Phaeobacter piscinae GCF 002407245 1
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AAI clade 15-5-1
medoid: Tritonibacter scottomollicae GCF 003003215 1
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AAI clade 15-5-2
medoid: Nereida ignava GCF 001049735 1
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AAI clade 15-5-3
medoid: Phaeobacter piscinae GCF 002407245 1
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AAI clade 15-5-4
medoid: Thalassobacter stenotrophicus DSM 16310 GCF 900141945 1
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AAI clade 15-5-5
medoid: Tritonibacter multivorans GCF 900112515 1
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AAI clade 15-5-6
medoid: Tritonibacter litoralis GCF 009496005 1
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AAI clade 15-5-7
medoid: Zongyanglinia marina GCF 005771405 1
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AAI clade 15-5-8
medoid: Planktotalea frisia GCF 001890925 1
1 dataset: Planktotalea frisia GCF 001890925 1 (AAI: 100.0%)
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AAI clade 15-5-9
medoid: Shimia marina GCF 001458175 1
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AAI clade 15-5-10
medoid: Aliiroseovarius lamellibrachiae GCF 018599245 1
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AAI clade 15-5-11
medoid: Amylibacter cionae GCF 014643735 1
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AAI clade 15-5-12
medoid: Amylibacter kogurei GCF 002742285 1
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AAI clade 15-5-13
medoid: Amylibacter marinus GCF 030160015 1
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AAI clade 15-5-14
medoid: Cochlodiniinecator piscidefendens GCF 011326755 1
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AAI clade 15-5-15
medoid: Cognatishimia activa GCF 001458335 1
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AAI clade 15-5-16
medoid: Falsihalocynthiibacter arcticus GCF 000812665 2
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AAI clade 15-5-17
medoid: Gymnodinialimonas ceratoperidinii GCF 019297855 1
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AAI clade 15-5-18
medoid: Halocynthiibacter namhaensis GCF 000812685 1
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AAI clade 15-5-19
medoid: Jannaschia faecimaris GCF 900107415 1
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AAI clade 15-5-20
medoid: Jannaschia pohangensis GCF 900113875 1
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AAI clade 15-5-21
medoid: Jannaschia seosinensis GCF 001408515 1
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AAI clade 15-5-22
medoid: Leisingera daeponensis DSM 23529 GCF 000473145 1
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AAI clade 15-5-23
medoid: Leisingera methylohalidivorans DSM 14336 GCF 000511355 1
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AAI clade 15-5-24
medoid: Litorivita pollutaquae GCF 003205515 1
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AAI clade 15-5-25
medoid: Oceaniglobus indicus GCF 002751875 1
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AAI clade 15-5-26
medoid: Pacificibacter marinus GCF 900109555 1
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AAI clade 15-5-27
medoid: Pacificitalea manganoxidans GCF 002504165 1
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AAI clade 15-5-28
medoid: Pseudooceanicola algae GCF 003590145 2
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AAI clade 15-5-29
medoid: Pseudooctadecabacter jejudonensis GCF 900172275 1
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AAI clade 15-5-30
medoid: Pseudophaeobacter flagellatus GCF 021228235 1
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AAI clade 15-5-31
medoid: Sedimentitalea nanhaiensis DSM 24252 GCF 000473225 1
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AAI clade 15-5-32
medoid: Shimia sediminis GCF 003990645 1
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AAI clade 15-5-33
medoid: Shimia litoralis GCF 005518135 1
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AAI clade 15-5-34
medoid: Sulfitobacter algicola GCF 013315265 1
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AAI clade 15-5-35
medoid: Thalassorhabdomicrobium marinisediminis GCF 003072065 1
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AAI clade 15-5-1
medoid: Tritonibacter scottomollicae GCF 003003215 1
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AAI clade 15-6
medoid: Roseovarius marisflavi GCF 900142625 1
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AAI clade 15-7
medoid: Limimaricola variabilis GCF 014195545 1
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AAI clade 15-8
medoid: Thioclava marina GCF 002020135 1
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AAI clade 15-9
medoid: Litoreibacter halocynthiae GCF 004365635 1
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AAI clade 15-10
medoid: Paracoccus fontiphilus GCF 017356265 1
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AAI clade 15-11
medoid: Sulfitobacter dubius GCF 900113435 1
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AAI clade 15-1
medoid: Rhodobacter kunshanensis GCF 011059185 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1