AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
-
AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
-
AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
-
AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
-
AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
-
AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
-
AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
-
AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
-
AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
-
AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
-
AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
-
AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
-
AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
-
AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
-
AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
-
AAI clade 15-1
medoid: Rhodobacter kunshanensis GCF 011059185 1
-
AAI clade 15-2
medoid: Salipiger pentaromativorans GCF 024721115 1
-
AAI clade 15-3
medoid: Paracoccus versutus GCF 003387045 1
-
AAI clade 15-4
medoid: Ruegeria intermedia GCF 900129345 1
-
AAI clade 15-5
medoid: Phaeobacter piscinae GCF 002407245 1
-
AAI clade 15-6
medoid: Roseovarius marisflavi GCF 900142625 1
-
AAI clade 15-7
medoid: Limimaricola variabilis GCF 014195545 1
-
AAI clade 15-8
medoid: Thioclava marina GCF 002020135 1
-
AAI clade 15-9
medoid: Litoreibacter halocynthiae GCF 004365635 1
-
AAI clade 15-10
medoid: Paracoccus fontiphilus GCF 017356265 1
-
AAI clade 15-11
medoid: Sulfitobacter dubius GCF 900113435 1
-
AAI clade 15-11-1
medoid: Pseudosulfitobacter koreensis GCF 024733015 1
-
AAI clade 15-11-2
medoid: Roseobacter litoralis Och 149 GCF 000154785 2
-
AAI clade 15-11-3
medoid: Sulfitobacter donghicola DSW 25 KCTC 12864 JCM 14565 GCF 000622405 1
-
AAI clade 15-11-4
medoid: Sulfitobacter pacificus GCF 030159975 1
-
AAI clade 15-11-5
medoid: Sulfitobacter guttiformis GCF 003610455 1
-
AAI clade 15-11-6
medoid: Sulfitobacter dubius GCF 900113435 1
-
AAI clade 15-11-7
medoid: Sulfitobacter mediterraneus GCF 003054325 1
-
AAI clade 15-11-8
medoid: Sulfitobacter noctilucae GCF 000622365 1
-
AAI clade 15-11-9
medoid: Ascidiaceihabitans donghaensis GCF 900302465 1
-
AAI clade 15-11-10
medoid: Roseobacter cerasinus GCF 009811755 1
-
AAI clade 15-11-11
medoid: Roseobacter insulae GCF 019375555 1
-
AAI clade 15-11-12
medoid: Roseobacter ponti GCF 012932215 1
-
AAI clade 15-11-13
medoid: Sulfitobacter aestuariivivens GCF 014763045 1
-
AAI clade 15-11-14
medoid: Sulfitobacter albidus GCF 018200035 1
1 dataset: Sulfitobacter albidus GCF 018200035 1 (AAI: 100.0%)
-
AAI clade 15-11-15
medoid: Sulfitobacter alexandrii GCF 001886735 1
-
AAI clade 15-11-16
medoid: Sulfitobacter brevis GCF 900112755 1
-
AAI clade 15-11-17
medoid: Sulfitobacter pontiacus GCF 900106935 1
-
AAI clade 15-11-18
medoid: Sulfitobacter sabulilitoris GCF 005887615 1
-
AAI clade 15-11-19
medoid: Sulfitobacter sediminilitoris GCF 010667575 1
-
AAI clade 15-11-20
medoid: Tateyamaria pelophila GCF 019966495 1
-
AAI clade 15-11-1
medoid: Pseudosulfitobacter koreensis GCF 024733015 1
-
AAI clade 15-1
medoid: Rhodobacter kunshanensis GCF 011059185 1
-
AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
-
AAI clade 17
medoid: Dorea hominis GCF 014287705 1
-
AAI clade 18
medoid: Massilia putida GCF 001941825 1
-
AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
-
AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
-
AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
-
AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
-
AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
-
AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
-
AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
-
AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
-
AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
-
AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
-
AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
-
AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
-
AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
-
AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
-
AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
-
AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1