AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
    • AAI clade 14-1 medoid: Bordetella pseudohinzii GCF 000657795 2
    • AAI clade 14-2 medoid: Alcaligenes phenolicus GCF 026344105 1
    • AAI clade 14-3 medoid: Achromobacter dolens GCF 902859745 1
      • AAI clade 14-3-1 medoid: Achromobacter aegrifaciens GCF 902859735 1
      • AAI clade 14-3-2 medoid: Achromobacter denitrificans GCF 013267395 1
      • AAI clade 14-3-3 medoid: Achromobacter dolens GCF 902859745 1
      • AAI clade 14-3-4 medoid: Achromobacter marplatensis GCF 003315095 1
      • AAI clade 14-3-5 medoid: Achromobacter spanius GCF 002812705 1
      • AAI clade 14-3-6 medoid: Achromobacter aestuarii GCF 009866805 1
      • AAI clade 14-3-7 medoid: Achromobacter aloeverae GCF 004121055 1
      • AAI clade 14-3-8 medoid: Achromobacter mucicolens GCF 902859725 1
      • AAI clade 14-3-9 medoid: Achromobacter deleyi GCF 902859705 1
      • AAI clade 14-3-10 medoid: Achromobacter pestifer GCF 902859625 1
      • AAI clade 14-3-11 medoid: Achromobacter veterisilvae GCF 900496975 1
      • AAI clade 14-3-12 medoid: Bordetella bronchialis GCF 001676705 1
        1 dataset: Bordetella bronchialis GCF 001676705 1 (AAI: 100.0%)
      • AAI clade 14-3-13 medoid: Bordetella flabilis GCF 001676725 1
      • AAI clade 14-3-14 medoid: Bordetella petrii GCF 000067205 1
      • AAI clade 14-3-15 medoid: Corticimicrobacter populi GCF 003123725 1
      • AAI clade 14-3-16 medoid: Jezberella montanilacus GCF 003003055 1
      • AAI clade 14-3-17 medoid: Pigmentiphaga kullae GCF 004216695 1
      • AAI clade 14-3-18 medoid: Pigmentiphaga litoralis GCF 014651835 1
      • AAI clade 14-3-19 medoid: Sheuella amnicola GCF 010499255 1
      • AAI clade 14-3-20 medoid: Verticiella sediminum GCF 007558815 1
      • AAI clade 14-3-21 medoid: Zwartia hollandica GCF 019923725 1
      • AAI clade 14-3-22 medoid: Zwartia panacis GCF 030410395 1
      • AAI clade 14-3-23 medoid: Zwartia vadi GCF 030410375 1
    • AAI clade 14-4 medoid: Acidithiobacillus concretivorus GCF 018853445 1
    • AAI clade 14-5 medoid: Chitiniphilus eburneus GCF 005048205 1
    • AAI clade 14-6 medoid: Pollutimonas harenae GCF 004153685 1
    • AAI clade 14-7 medoid: Gemmata obscuriglobus GCF 008065095 1
    • AAI clade 14-8 medoid: Zeimonas sediminis GCF 023721795 1
    • AAI clade 14-9 medoid: Advenella incenata GCF 004217095 1
    • AAI clade 14-10 medoid: Tepidiphilus margaritifer DSM 15129 GCF 000425565 1
    • AAI clade 14-11 medoid: Aromatoleum anaerobium GCF 012910705 2
    • AAI clade 14-12 medoid: Aromatoleum petrolei GCF 012910985 1
    • AAI clade 14-13 medoid: Rhodocyclus tenuis GCF 009469755 1
    • AAI clade 14-14 medoid: Thauera humireducens GCF 001051995 2
    • AAI clade 14-15 medoid: Sutterella megalosphaeroides GCF 003609995 1
    • AAI clade 14-16 medoid: Tepidimonas aquatica GCF 007556585 1
    • AAI clade 14-17 medoid: Dakarella massiliensis GCF 001182045 1
    • AAI clade 14-18 medoid: Denitromonas halophila GCF 007625155 1
    • AAI clade 14-19 medoid: Geothrix oryzae GCF 030295385 1
    • AAI clade 14-20 medoid: Serpentinimonas barnesii GCF 000696225 1
    • AAI clade 14-21 medoid: Hydrogenophilus thermoluteolus GCF 003574215 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1