AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
    • AAI clade 13-1 medoid: Bacteroides luhongzhouii GCF 009193295 2
    • AAI clade 13-2 medoid: Marinifilum breve GCF 003202155 1
    • AAI clade 13-3 medoid: Flavobacterium proteolyticum GCF 015223105 1
    • AAI clade 13-4 medoid: Flavivirga abyssicola GCF 030540775 2
    • AAI clade 13-5 medoid: Flavobacterium resistens GCF 009674815 1
    • AAI clade 13-6 medoid: Tenacibaculum singaporense GCF 003867015 1
    • AAI clade 13-7 medoid: Parabacteroides merdae ATCC 43184 GCF 025151215 1
    • AAI clade 13-8 medoid: Prevotella vespertina GCF 009728485 1
    • AAI clade 13-9 medoid: Salegentibacter agarivorans GCF 900113135 1
    • AAI clade 13-10 medoid: Alistipes provencensis GCF 900083545 1
    • AAI clade 13-11 medoid: Muricauda lutisoli GCF 017313105 1
    • AAI clade 13-12 medoid: Chryseobacterium cucumeris GCF 001593385 1
    • AAI clade 13-13 medoid: Fulvivirga ulvae GCF 021389975 1
    • AAI clade 13-14 medoid: Flavobacterium yafengii GCF 030010375 1
    • AAI clade 13-15 medoid: Mucilaginibacter endophyticus GCF 003351025 1
    • AAI clade 13-16 medoid: Pedobacter riviphilus GCF 014692875 1
    • AAI clade 13-17 medoid: Pontibacter ramchanderi GCF 002846395 1
    • AAI clade 13-18 medoid: Algoriphagus algorifonticola GCF 007655305 1
    • AAI clade 13-19 medoid: Sphingobacterium puteale GCF 003627955 1
    • AAI clade 13-20 medoid: Aquimarina megaterium XH134 GCF 000520975 1
    • AAI clade 13-21 medoid: Aequorivita aquimaris GCF 001573155 1
    • AAI clade 13-22 medoid: Spirosoma aureum GCF 011604685 1
    • AAI clade 13-23 medoid: Maribacter forsetii DSM 18668 GCF 000744105 1
    • AAI clade 13-24 medoid: Chitinophaga eiseniae GCF 900167135 1
    • AAI clade 13-25 medoid: Longitalea arenae GCF 016924755 1
    • AAI clade 13-26 medoid: Dyadobacter psychrophilus GCF 900167945 1
    • AAI clade 13-27 medoid: Winogradskyella thalassocola GCF 900099995 1
    • AAI clade 13-28 medoid: Hymenobacter glacieicola GCF 014640315 1
      • AAI clade 13-28-1 medoid: Hymenobacter latericoloratus GCF 014199535 1
      • AAI clade 13-28-2 medoid: Hymenobacter qilianensis GCF 014489555 1
      • AAI clade 13-28-3 medoid: Hymenobacter lapidiphilus GCF 013377885 1
      • AAI clade 13-28-4 medoid: Hymenobacter citatus GCF 014333615 1
      • AAI clade 13-28-5 medoid: Hymenobacter rubripertinctus GCF 003583925 1
      • AAI clade 13-28-6 medoid: Hymenobacter cellulosivorans GCF 022919135 1
      • AAI clade 13-28-7 medoid: Hymenobacter busanensis GCF 008727865 1
      • AAI clade 13-28-8 medoid: Hymenobacter yonginensis GCF 027625995 1
      • AAI clade 13-28-9 medoid: Hymenobacter crusticola GCF 002154225 1
      • AAI clade 13-28-10 medoid: Hymenobacter persicinus GCF 004167665 1
      • AAI clade 13-28-11 medoid: Hymenobacter sediminicola GCF 014250515 1
      • AAI clade 13-28-12 medoid: Hymenobacter edaphi GCF 003258365 1
      • AAI clade 13-28-13 medoid: Hymenobacter rigui GCF 003944715 1
      • AAI clade 13-28-14 medoid: Hymenobacter wooponensis GCF 004745865 1
      • AAI clade 13-28-15 medoid: Hymenobacter sublimis GCF 023101345 1
        2 datasets: Hymenobacter glacieicola GCF 014640315 1 (AAI: 94.92%) and Hymenobacter sublimis GCF 023101345 1 (AAI: 100.0%)
      • AAI clade 13-28-16 medoid: Hymenobacter guriensis GCF 015773195 1
      • AAI clade 13-28-17 medoid: Hymenobacter jejuensis GCF 006337165 1
      • AAI clade 13-28-18 medoid: Hymenobacter mucosus GCF 900188255 1
      • AAI clade 13-28-19 medoid: Hymenobacter telluris GCF 017313265 1
      • AAI clade 13-28-20 medoid: Hymenobacter oligotrophus GCF 003574965 1
      • AAI clade 13-28-21 medoid: Hymenobacter perfusus GCF 003944765 1
      • AAI clade 13-28-22 medoid: Hymenobacter translucens GCF 020685205 1
    • AAI clade 13-29 medoid: Fodinibius halophilus GCF 011059105 1
    • AAI clade 13-30 medoid: Hymenobacter rubidus GCF 016734815 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1