AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 11-1
medoid: Streptomyces tanashiensis GCF 014648895 1
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AAI clade 11-1-1
medoid: Streptomyces tirandamycinicus GCF 003097515 1
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AAI clade 11-1-2
medoid: Streptomyces rubiginosohelvolus GCF 014649875 1
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AAI clade 11-1-3
medoid: Streptomyces atroolivaceus GCF 000717025 1
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AAI clade 11-1-4
medoid: Streptomyces tanashiensis GCF 014648895 1
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AAI clade 11-1-4-1
medoid: Streptomyces tanashiensis GCF 014648895 1
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AAI clade 11-1-4-1-1
medoid: Streptomyces cinereoruber GCF 009299385 1
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AAI clade 11-1-4-1-2
medoid: Streptomyces venezuelae ATCC 10712 GCF 008639165 1
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AAI clade 11-1-4-1-3
medoid: Streptomyces exfoliatus GCF 000718175 1
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AAI clade 11-1-4-1-4
medoid: Streptomyces vietnamensis GCF 000830005 1
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AAI clade 11-1-4-1-5
medoid: Streptomyces gardneri GCF 006539185 1
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AAI clade 11-1-4-1-6
medoid: Streptomyces wedmorensis GCF 000716445 1
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AAI clade 11-1-4-1-7
medoid: Streptomyces zaomyceticus GCF 014656215 1
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AAI clade 11-1-4-1-1
medoid: Streptomyces cinereoruber GCF 009299385 1
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AAI clade 11-1-4-2
medoid: Streptomyces roseolus GCF 014649855 1
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AAI clade 11-1-4-3
medoid: Streptomyces lateritius GCF 014649715 1
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AAI clade 11-1-4-4
medoid: Streptomyces violascens GCF 014649955 1
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AAI clade 11-1-4-5
medoid: Streptomyces laurentii GCA 002355495 1
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AAI clade 11-1-4-1
medoid: Streptomyces tanashiensis GCF 014648895 1
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AAI clade 11-1-5
medoid: Streptomyces nojiriensis GCF 017639205 1
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AAI clade 11-1-6
medoid: Streptomyces hiroshimensis GCF 014650335 1
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AAI clade 11-1-7
medoid: Kitasatospora indigofera GCF 014655955 1
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AAI clade 11-1-1
medoid: Streptomyces tirandamycinicus GCF 003097515 1
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AAI clade 11-2
medoid: Kribbella sindirgiensis GCF 004331435 1
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AAI clade 11-3
medoid: Corynebacterium lehmanniae GCF 027570055 1
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AAI clade 11-4
medoid: Streptomyces sabulosicollis GCF 016103465 1
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AAI clade 11-5
medoid: Streptomyces tricolor GCF 002155905 1
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AAI clade 11-6
medoid: Nocardiopsis dassonvillei GCF 900638215 1
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AAI clade 11-7
medoid: Nonomuraea jabiensis GCF 014204795 1
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AAI clade 11-8
medoid: Nocardioides pinisoli GCF 024199985 1
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AAI clade 11-9
medoid: Actinomadura citrea GCF 013409045 1
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AAI clade 11-1
medoid: Streptomyces tanashiensis GCF 014648895 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1