AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
• AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
• AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
• AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
• AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
• AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
• AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
• AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
• AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
• AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 10-1 medoid: Mycolicibacterium senegalense GCF 031458155 1
  • AAI clade 10-2 medoid: Mycobacterium parascrofulaceum ATCC BAA 614 GCF 000164135 1
  • AAI clade 10-3 medoid: Rhodococcus wratislaviensis GCF 900455735 1
  • AAI clade 10-4 medoid: Actinoplanes pyxinae GCF 026626335 1
  • AAI clade 10-5 medoid: Corynebacterium tuberculostearicum GCF 013408445 1
  • AAI clade 10-6 medoid: Micromonospora solifontis GCF 003725545 1
  • AAI clade 10-7 medoid: Amycolatopsis decaplanina DSM 44594 GCF 000342005 1
    • AAI clade 10-7-1 medoid: Amycolatopsis methanolica 239 GCF 000739085 1
    • AAI clade 10-7-2 medoid: Amycolatopsis lurida GCF 900105055 1
      • AAI clade 10-7-2-1 medoid: Amycolatopsis regifaucium GCF 001558125 2
      • AAI clade 10-7-2-2 medoid: Amycolatopsis alba DSM 44262 GCF 000384215 1
      • AAI clade 10-7-2-3 medoid: Amycolatopsis thailandensis GCF 002234405 1
      • AAI clade 10-7-2-4 medoid: Amycolatopsis keratiniphila subsp. keratiniphila GCF 001620365 2
      • AAI clade 10-7-2-5 medoid: Amycolatopsis roodepoortensis GCF 014873915 1
      • AAI clade 10-7-2-6 medoid: Amycolatopsis coloradensis GCF 001953865 1
      • AAI clade 10-7-2-7 medoid: Amycolatopsis decaplanina DSM 44594 GCF 000342005 1
        1 dataset: Amycolatopsis decaplanina DSM 44594 GCF 000342005 1 (AAI: 100.0%)
      • AAI clade 10-7-2-8 medoid: Amycolatopsis japonica GCF 000732925 1
      • AAI clade 10-7-2-9 medoid: Amycolatopsis nigrescens CSC17Ta 90 GCF 000384315 1
      • AAI clade 10-7-2-10 medoid: Amycolatopsis orientalis DSM 40040 KCTC 9412 GCF 000478275 1
      • AAI clade 10-7-2-11 medoid: Amycolatopsis pittospori GCF 013870525 1
      • AAI clade 10-7-2-12 medoid: Amycolatopsis umgeniensis GCF 014205155 1
      • AAI clade 10-7-2-13 medoid: Amycolatopsis xylanica GCF 900107045 1
    • AAI clade 10-7-3 medoid: Prauserella isguenensis GCF 014191605 1
    • AAI clade 10-7-4 medoid: Prauserella endophytica GCF 005146945 1
    • AAI clade 10-7-5 medoid: Saccharomonospora cyanea NA 134 GCF 000244975 1
    • AAI clade 10-7-6 medoid: Amycolatopsis sacchari GCF 900114035 1
    • AAI clade 10-7-7 medoid: Amycolatopsis dendrobii GCF 014145675 1
    • AAI clade 10-7-8 medoid: Amycolatopsis kentuckyensis GCF 002155975 1
    • AAI clade 10-7-9 medoid: Saccharomonospora halophila 8 GCF 000383775 1
    • AAI clade 10-7-10 medoid: Amycolatopsis albispora GCF 003312875 1
    • AAI clade 10-7-11 medoid: Haloechinothrix aidingensis GCF 013450155 1
  • AAI clade 10-8 medoid: Gordonia alkanivorans NBRC 16433 GCF 000225505 1
  • AAI clade 10-9 medoid: Nocardia araoensis NBRC 100135 GCF 000308435 1
  • AAI clade 10-10 medoid: Pseudonocardia halophobica GCF 027922425 1
  • AAI clade 10-11 medoid: Lentzea atacamensis GCF 003148865 1
  • AAI clade 10-12 medoid: Saccharopolyspora hirsuta GCF 008630535 1
  • AAI clade 10-13 medoid: Geodermatophilus siccatus GCF 900103785 1
• AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
• AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
• AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
• AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
• AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
• AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
• AAI clade 17 medoid: Dorea hominis GCF 014287705 1
• AAI clade 18 medoid: Massilia putida GCF 001941825 1
• AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
• AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
• AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
• AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
• AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
• AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
• AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
• AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
• AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
• AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
• AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
• AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
• AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
• AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
• AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
• AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1