AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
    • AAI clade 10-1 medoid: Mycolicibacterium senegalense GCF 031458155 1
    • AAI clade 10-2 medoid: Mycobacterium parascrofulaceum ATCC BAA 614 GCF 000164135 1
    • AAI clade 10-3 medoid: Rhodococcus wratislaviensis GCF 900455735 1
      • AAI clade 10-3-1 medoid: Rhodococcus wratislaviensis GCF 900455735 1
        • AAI clade 10-3-1-1 medoid: Rhodococcus qingshengii GCF 900094765 1
        • AAI clade 10-3-1-2 medoid: Rhodococcus wratislaviensis GCF 900455735 1
        • AAI clade 10-3-1-3 medoid: Rhodococcus fascians NBRC 12155 LMG 3623 GCF 000761055 1
        • AAI clade 10-3-1-4 medoid: Rhodococcus triatomae GCF 900099725 1
        • AAI clade 10-3-1-5 medoid: Rhodococcus rhodnii GCF 008011915 1
        • AAI clade 10-3-1-6 medoid: Antrihabitans stalactiti GCF 012932915 1
        • AAI clade 10-3-1-7 medoid: Millisia brevis NBRC 105863 GCF 001552615 1
        • AAI clade 10-3-1-8 medoid: Rhodococcus kyotonensis GCF 900188125 1
        • AAI clade 10-3-1-9 medoid: Rhodococcus marinonascens NBRC 14363 GCF 001894885 1
      • AAI clade 10-3-2 medoid: Dietzia lutea GCF 003096075 1
      • AAI clade 10-3-3 medoid: Prescottella agglutinans GCF 004011865 1
      • AAI clade 10-3-4 medoid: Rhodococcus rhodochrous GCF 001646825 1
      • AAI clade 10-3-5 medoid: Rhodococcus aetherivorans GCF 009176285 1
      • AAI clade 10-3-6 medoid: Rhodococcus kroppenstedtii GCF 001646725 1
      • AAI clade 10-3-7 medoid: Hoyosella altamirensis GCF 001653095 1
      • AAI clade 10-3-8 medoid: Lolliginicoccus levis GCF 026008515 1
      • AAI clade 10-3-9 medoid: Rhodococcus maanshanensis GCF 900109405 1
      • AAI clade 10-3-10 medoid: Tomitella gaofuii GCF 014126825 1
      • AAI clade 10-3-11 medoid: Lawsonella clevelandensis GCF 001293125 1
      • AAI clade 10-3-12 medoid: Segniliparus rotundus DSM 44985 GCF 000092825 1
      • AAI clade 10-3-13 medoid: Tsukamurella conjunctivitidis GCF 007858475 1
    • AAI clade 10-4 medoid: Actinoplanes pyxinae GCF 026626335 1
    • AAI clade 10-5 medoid: Corynebacterium tuberculostearicum GCF 013408445 1
    • AAI clade 10-6 medoid: Micromonospora solifontis GCF 003725545 1
    • AAI clade 10-7 medoid: Amycolatopsis decaplanina DSM 44594 GCF 000342005 1
    • AAI clade 10-8 medoid: Gordonia alkanivorans NBRC 16433 GCF 000225505 1
    • AAI clade 10-9 medoid: Nocardia araoensis NBRC 100135 GCF 000308435 1
    • AAI clade 10-10 medoid: Pseudonocardia halophobica GCF 027922425 1
    • AAI clade 10-11 medoid: Lentzea atacamensis GCF 003148865 1
    • AAI clade 10-12 medoid: Saccharopolyspora hirsuta GCF 008630535 1
    • AAI clade 10-13 medoid: Geodermatophilus siccatus GCF 900103785 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1