AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: S10C300
    • AAI clade 1-1 medoid: S1C1437
    • AAI clade 1-2 medoid: S15C956
    • AAI clade 1-3 medoid: TR TUZ1 MB BINS 100 27
    • AAI clade 1-4 medoid: S23C3116
    • AAI clade 1-5 medoid: S5C236
    • AAI clade 1-6 medoid: AR G1 BINS 20 013
    • AAI clade 1-7 medoid: AR G1 MB BINS 100 25
    • AAI clade 1-8 medoid: S21C2719
    • AAI clade 1-9 medoid: S26C2742
    • AAI clade 1-10 medoid: S19C1121
    • AAI clade 1-11 medoid: S10C300
    • AAI clade 1-12 medoid: AR G1 MB BINS 5 2
    • AAI clade 1-13 medoid: S6C270
    • AAI clade 1-14 medoid: AR G1 norm MB BINS 100 15
    • AAI clade 1-15 medoid: S26C876
    • AAI clade 1-16 medoid: RO FF MB BINS 100 28
    • AAI clade 1-17 medoid: S12C1626
    • AAI clade 1-18 medoid: S25C140
    • AAI clade 1-19 medoid: CL LV1 MB BINS 70 3
    • AAI clade 1-20 medoid: S15C852
    • AAI clade 1-21 medoid: S19C416
    • AAI clade 1-22 medoid: S3C999
    • AAI clade 1-23 medoid: S21C1049
    • AAI clade 1-24 medoid: S19C364
    • AAI clade 1-25 medoid: DZ AGR MB BINS 100 1
    • AAI clade 1-26 medoid: DZ AGR norm BINS 10 005
    • AAI clade 1-27 medoid: S16C512
    • AAI clade 1-28 medoid: ES AV norm BINS 100 015
    • AAI clade 1-29 medoid: RO FF MB BINS 100 33
    • AAI clade 1-30 medoid: ES CM MB BINS 100 5
    • AAI clade 1-31 medoid: S16C239
    • AAI clade 1-32 medoid: IL EL6 MB BINS 70 5
    • AAI clade 1-33 medoid: IL EL6 norm MB BINS 100 6
    • AAI clade 1-34 medoid: S17C484
    • AAI clade 1-35 medoid: LG NZ norm BINS 100 005
    • AAI clade 1-36 medoid: S12C722
    • AAI clade 1-37 medoid: RO FF MB BINS 100 1
    • AAI clade 1-38 medoid: RO FF MB BINS 100 39
    • AAI clade 1-39 medoid: S21C1705
    • AAI clade 1-40 medoid: RO FF norm BINS 20 003
    • AAI clade 1-41 medoid: S10C422
    • AAI clade 1-42 medoid: RO FF norm MB BINS 70 34
    • AAI clade 1-43 medoid: S10C1249
    • AAI clade 1-44 medoid: S15C1662
    • AAI clade 1-45 medoid: S16C212
    • AAI clade 1-46 medoid: S6C1027
    • AAI clade 1-47 medoid: S17C269
    • AAI clade 1-48 medoid: S20C948
    • AAI clade 1-49 medoid: S17C2349
    • AAI clade 1-50 medoid: S17C398
    • AAI clade 1-51 medoid: S17C954
    • AAI clade 1-52 medoid: S20C1119
    • AAI clade 1-53 medoid: S21C1296
    • AAI clade 1-54 medoid: S20C669
    • AAI clade 1-55 medoid: US Lake norm MB BINS 20 6
    • AAI clade 1-56 medoid: S24C1516
    • AAI clade 1-57 medoid: S21C3990
    • AAI clade 1-58 medoid: US CM norm MB BINS 50 17
    • AAI clade 1-59 medoid: US Lake norm MB BINS 10 2
    • AAI clade 1-60 medoid: S24C1674
    • AAI clade 1-61 medoid: S24C2091
    • AAI clade 1-62 medoid: US Lake MB BINS 10 4
    • AAI clade 1-63 medoid: S25C1293
    • AAI clade 1-64 medoid: ZA BS norm MB BINS 100 47
    • AAI clade 1-65 medoid: S2C2974
    • AAI clade 1-66 medoid: S3C1194
    • AAI clade 1-67 medoid: S7C334
    • AAI clade 1-68 medoid: S7C351
    • AAI clade 1-69 medoid: S8C4251
    • AAI clade 1-70 medoid: TR TUZ2 MB BINS 50 6
      1 dataset: TR TUZ2 MB BINS 50 6 (AAI: 100.0%)
  • AAI clade 2 medoid: S20C2072
  • AAI clade 3 medoid: S2C1070