AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: S10C300
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AAI clade 1-1
medoid: S1C1437
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AAI clade 1-2
medoid: S15C956
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AAI clade 1-3
medoid: TR TUZ1 MB BINS 100 27
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AAI clade 1-4
medoid: S23C3116
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AAI clade 1-5
medoid: S5C236
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AAI clade 1-6
medoid: AR G1 BINS 20 013
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AAI clade 1-7
medoid: AR G1 MB BINS 100 25
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AAI clade 1-8
medoid: S21C2719
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AAI clade 1-9
medoid: S26C2742
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AAI clade 1-10
medoid: S19C1121
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AAI clade 1-11
medoid: S10C300
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AAI clade 1-12
medoid: AR G1 MB BINS 5 2
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AAI clade 1-13
medoid: S6C270
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AAI clade 1-14
medoid: AR G1 norm MB BINS 100 15
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AAI clade 1-15
medoid: S26C876
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AAI clade 1-16
medoid: RO FF MB BINS 100 28
3 datasets: AR G1 norm MB BINS 100 2 (AAI: 72.68%), RO FF MB BINS 100 28 (AAI: 100.0%), and RO FF norm MB BINS 40 9 (AAI: 76.41%)
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AAI clade 1-17
medoid: S12C1626
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AAI clade 1-18
medoid: S25C140
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AAI clade 1-19
medoid: CL LV1 MB BINS 70 3
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AAI clade 1-20
medoid: S15C852
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AAI clade 1-21
medoid: S19C416
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AAI clade 1-22
medoid: S3C999
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AAI clade 1-23
medoid: S21C1049
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AAI clade 1-24
medoid: S19C364
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AAI clade 1-25
medoid: DZ AGR MB BINS 100 1
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AAI clade 1-26
medoid: DZ AGR norm BINS 10 005
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AAI clade 1-27
medoid: S16C512
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AAI clade 1-28
medoid: ES AV norm BINS 100 015
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AAI clade 1-29
medoid: RO FF MB BINS 100 33
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AAI clade 1-30
medoid: ES CM MB BINS 100 5
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AAI clade 1-31
medoid: S16C239
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AAI clade 1-32
medoid: IL EL6 MB BINS 70 5
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AAI clade 1-33
medoid: IL EL6 norm MB BINS 100 6
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AAI clade 1-34
medoid: S17C484
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AAI clade 1-35
medoid: LG NZ norm BINS 100 005
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AAI clade 1-36
medoid: S12C722
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AAI clade 1-37
medoid: RO FF MB BINS 100 1
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AAI clade 1-38
medoid: RO FF MB BINS 100 39
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AAI clade 1-39
medoid: S21C1705
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AAI clade 1-40
medoid: RO FF norm BINS 20 003
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AAI clade 1-41
medoid: S10C422
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AAI clade 1-42
medoid: RO FF norm MB BINS 70 34
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AAI clade 1-43
medoid: S10C1249
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AAI clade 1-44
medoid: S15C1662
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AAI clade 1-45
medoid: S16C212
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AAI clade 1-46
medoid: S6C1027
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AAI clade 1-47
medoid: S17C269
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AAI clade 1-48
medoid: S20C948
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AAI clade 1-49
medoid: S17C2349
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AAI clade 1-50
medoid: S17C398
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AAI clade 1-51
medoid: S17C954
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AAI clade 1-52
medoid: S20C1119
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AAI clade 1-53
medoid: S21C1296
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AAI clade 1-54
medoid: S20C669
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AAI clade 1-55
medoid: US Lake norm MB BINS 20 6
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AAI clade 1-56
medoid: S24C1516
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AAI clade 1-57
medoid: S21C3990
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AAI clade 1-58
medoid: US CM norm MB BINS 50 17
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AAI clade 1-59
medoid: US Lake norm MB BINS 10 2
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AAI clade 1-60
medoid: S24C1674
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AAI clade 1-61
medoid: S24C2091
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AAI clade 1-62
medoid: US Lake MB BINS 10 4
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AAI clade 1-63
medoid: S25C1293
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AAI clade 1-64
medoid: ZA BS norm MB BINS 100 47
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AAI clade 1-65
medoid: S2C2974
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AAI clade 1-66
medoid: S3C1194
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AAI clade 1-67
medoid: S7C334
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AAI clade 1-68
medoid: S7C351
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AAI clade 1-69
medoid: S8C4251
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AAI clade 1-70
medoid: TR TUZ2 MB BINS 50 6
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AAI clade 1-1
medoid: S1C1437
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AAI clade 2
medoid: S20C2072
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AAI clade 3
medoid: S2C1070