AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 1-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 1-1-1
medoid: Nitrolancea hollandica Lb GCF 000297255 1
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AAI clade 1-1-2
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 1-1-2-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 1-1-2-1-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 1-1-2-1-2
medoid: Caldisericum exile AZM16c01 GCF 000284335 1
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AAI clade 1-1-2-1-3
medoid: Candidatus Methylomirabilis tolerans GCA 019912425 1
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AAI clade 1-1-2-1-4
medoid: Candidatus Muiribacterium halophilum GCA 002869225 1
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AAI clade 1-1-2-1-5
medoid: Acherontichlamydia pituitae asm GCA 019634675 1
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AAI clade 1-1-2-1-6
medoid: Coprothermobacter platensis DSM 11748 GCF 000378005 1
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AAI clade 1-1-2-1-7
medoid: Allomeiothermus silvanus DSM 9946 GCF 000092125 1
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AAI clade 1-1-2-1-8
medoid: Caviibacter abscessus GCF 001517835 1
1 dataset: Caviibacter abscessus GCF 001517835 1 (AAI: 100.0%)
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AAI clade 1-1-2-1-9
medoid: Palauibacter irciniicola asm GCA 009836005 1
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AAI clade 1-1-2-1-10
medoid: Thermodesulfobium acidiphilum GCF 003057965 1
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AAI clade 1-1-2-1-11
medoid: Athalassotoga saccharophila GCF 009936215 1
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AAI clade 1-1-2-1-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 1-1-2-2
medoid: Abiotrophia defectiva ATCC 49176 GCA 037041345 1
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AAI clade 1-1-2-3
medoid: Bipolaricaulis anaerobius asm GCA 900465355 1
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AAI clade 1-1-2-4
medoid: Elusimicrobium minutum Pei191 GCF 000020145 1
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AAI clade 1-1-2-5
medoid: Chitinivibrio alkaliphilus ACht1 GCF 000474745 1
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AAI clade 1-1-2-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 1-1-1
medoid: Nitrolancea hollandica Lb GCF 000297255 1
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AAI clade 1-2
medoid: Alkalidesulfovibrio alkalitolerans DSM 16529 GCF 000422245 1
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AAI clade 1-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 2
medoid: Longibacter salinarum GCF 002554795 1
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AAI clade 3
medoid: Candidatus Pyrohabitans jungbluthii GCA 002010065 2