AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
-
AAI clade 1-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
-
AAI clade 1-1-1
medoid: Nitrolancea hollandica Lb GCF 000297255 1
-
AAI clade 1-1-2
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
-
AAI clade 1-1-2-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
-
AAI clade 1-1-2-2
medoid: Abiotrophia defectiva ATCC 49176 GCA 037041345 1
2 datasets: Abiotrophia defectiva ATCC 49176 GCA 037041345 1 (AAI: 100.0%) and Acholeplasma equifetale ATCC 29724 GCF 000687735 1 (AAI: 42.7%)
-
AAI clade 1-1-2-3
medoid: Bipolaricaulis anaerobius asm GCA 900465355 1
-
AAI clade 1-1-2-4
medoid: Elusimicrobium minutum Pei191 GCF 000020145 1
-
AAI clade 1-1-2-5
medoid: Chitinivibrio alkaliphilus ACht1 GCF 000474745 1
-
AAI clade 1-1-2-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
-
AAI clade 1-1-1
medoid: Nitrolancea hollandica Lb GCF 000297255 1
-
AAI clade 1-2
medoid: Alkalidesulfovibrio alkalitolerans DSM 16529 GCF 000422245 1
-
AAI clade 1-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
-
AAI clade 2
medoid: Longibacter salinarum GCF 002554795 1
-
AAI clade 3
medoid: Candidatus Pyrohabitans jungbluthii GCA 002010065 2