AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 1-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 1-1-1
medoid: Nitrolancea hollandica Lb GCF 000297255 1
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AAI clade 1-1-1-1
medoid: Abditibacterium utsteinense GCF 002973605 1
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AAI clade 1-1-1-2
medoid: Acaricomes phytoseiuli DSM 14247 GCF 000376245 1
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AAI clade 1-1-1-2-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
8 datasets: Aquifex aeolicus VF5 GCF 000008625 1 (AAI: 42.98%), Atribacter laminatus GCF 015775515 1 (AAI: 41.18%), Calditerrivibrio nitroreducens DSM 19672 GCF 000183405 1 (AAI: 41.98%), Hydrothermus pacificus asm GCA 002011615 1 (AAI: 41.48%), Methylomirabilis oxygeniifera asm GCA 000091165 1 (AAI: 41.41%), Candidatus Magnetominusculus xianensis GCF 001541255 1 (AAI: 41.11%), Acetomicrobium hydrogeniformans ATCC BAA 1850 GCF 000160455 2 (AAI: 42.43%), and Thermosulfidibacter takaii ABI70S6 GCF 001547735 1 (AAI: 100.0%)
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AAI clade 1-1-1-2-2
medoid: Allomeiothermus silvanus DSM 9946 GCF 000092125 1
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AAI clade 1-1-1-2-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 1-1-1-3
medoid: Armatimonas rosea GCF 014202505 1
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AAI clade 1-1-1-4
medoid: Candidatus Aeolococcus gillhamiae GCA 003244045 1
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AAI clade 1-1-1-5
medoid: Saccharimonas aalborgensis asm GCF 000392435 1
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AAI clade 1-1-1-6
medoid: Nitrolancea hollandica Lb GCF 000297255 1
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AAI clade 1-1-1-7
medoid: Acaryochloris marina MBIC11017 GCF 000018105 1
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AAI clade 1-1-1-8
medoid: Vulcanimicrobium alpinum GCF 027923555 1
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AAI clade 1-1-1-1
medoid: Abditibacterium utsteinense GCF 002973605 1
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AAI clade 1-1-2
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 1-1-1
medoid: Nitrolancea hollandica Lb GCF 000297255 1
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AAI clade 1-2
medoid: Alkalidesulfovibrio alkalitolerans DSM 16529 GCF 000422245 1
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AAI clade 1-1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 2
medoid: Longibacter salinarum GCF 002554795 1
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AAI clade 3
medoid: Candidatus Pyrohabitans jungbluthii GCA 002010065 2