Methanoplasma termitum^Ts

Citation

Formal styling

Methanoplasma termitum^Ts Lang et al., 2015 (valid 2024)

Effective publication

Lang et al., 2015

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:bmcmeuab (validated)

Cannonical URL

https://seqco.de/i:46

Nomenclature

Rank

Species

Syllabication

ter'mi.tum

Etymology

L. gen. pl. n. termitum, a woodworm, a termite

Nomenclatural type

NCBI Assembly: GCF_000800805.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species identified by metagenomic analyses. Cells are cocci with a diameter of 0.5–0.8 µm. No cell wall. No autofluorescence under UV light due to lack of cofactor F420. Utilize only H2 + methanol or H2 + monomethylamine as substrates for methanogenesis. Require yeast extract, coenzyme M, and vitamins for growth. Species identified by physiological and genomic analyses of a highly enriched culture. The G+C content of the type genome is 49.2 mol%, and the genome size is 1.48 Mbp.

Classification

Archaea » “Euryarchaeota” » Thermoplasmata » Methanomassiliicoccales » Methanomethylophilaceae » Methanoplasma » Methanoplasma termitum^Ts

Parent

Methanoplasma gtdb

Genomics

Accession

NCBI Assembly:GCF_000800805.1

Type

Enrichment Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.0%
• Quality: 100.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

37.0 ×

Source

• BioSample: SAMN03224143

Other features

• G+C Content: 49.21%
• Coding Density: 90.74%
• Codon Table: 11
• N50: 1,488,669 bp
• Contigs: 1
• Largest Contig: 1,488,669 bp
• Assembly Length: 1,488,669 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

The genome is complete (100%). Special efforts were undertaken to obtain full chromosome combining 454 and Sanger sequencing (Lang et al., 2015). 

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCF_000800805.1
• Global Biodiversity Information Facility (GBIF)

Search sequences

• NCBI Nucleotide

Local history

• This name was last modified 3 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Protasov, Evgenii 8 months ago

Submitted by

Protasov, Evgenii 3 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 3 months ago