Costitxia debesea^Ts

Citation

Formal styling

Costitxia debesea^Ts Gago et al., 2024

Effective publication

Gago et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:4u3eoyk5 (validated)

Cannonical URL

https://seqco.de/i:43911

Nomenclature

Rank

Species

Syllabication

de.be.se'a

Etymology

N.L. fem. adj. debesea, arbitrary name formed from the DBSE (Deep Blue Sea Enterprise)

Nomenclatural type

NCBI Assembly: GCA_963583855.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

This species Costitxia debesea sp. nov. is the type to the new genus Costitxia gen. nov. This genus is also the type for the new family Costitxiaceae fam. nov., order Costitxiales ord. nov. and class Costitxiaia class. nov. Metabolic inference indicated that this organism is mainly aerobic since the complete electron transport chain could be detected, including cytochrome bd complex with high affinity to oxygen. The genetic repertoire also suggests that could be facultative anaerobe due to a putative capability to respire nitrate/nitrite or iron, and heterotrophic bacteria according to the central carbon metabolism. The MAG presents Cas-systems and lack the flagellar machinery required for motility. Genes could not be detected for oxidase, catalase and lysine decarboxylase. The MAG originates from groundwater on the island of Mallorca. The type material is strain T4.018, with a genome sequence available under ENA accession GCA_963583855.

Classification

Bacteria » Bacteroidota » Costitxiia » Costitxiales » Costitxiaceae » Costitxia » Costitxia debesea^Ts

Parent

Costitxia

Genomics

Accession

NCBI Assembly:GCA_963583855.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.6%
• Contamination: 2.19%
• Quality: 84.65

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

20.0 ×

Source

• BioSample: SAMEA114445985

Other features

• G+C Content: 42.3%
• Coding Density: 91.79%
• Codon Table: 11
• N50: 177,734 bp
• Contigs: 65
• Largest Contig: 454,615 bp
• Assembly Length: 4,497,801 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM was used to assess the completeness and contamination of the MAG.

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_963583855.1

Search sequences

• NCBI Nucleotide

Local history

• This name was last modified 13 days ago
• Submission process status
• Quality checks before valid publication

Registered by

Gago, Juan F. 3 months ago

Submitted by

Gago, Juan F. 2 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 2 months ago

Validated by

Palmer, Marike 13 days ago