Electrothrix rattekaaiensis


Citation

Formal styling
Electrothrix rattekaaiensis Plum-Jensen et al., 2024
Effective publication
Plum-Jensen et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:lmyvwfoa (validated)
Cannonical URL
https://seqco.de/i:33364

Nomenclature

Rank
Species
Syllabication
rat.te.kaai.en'sis
Etymology
N.L. fem. adj. rattekaaiensis, from Rattekaai, referring to the location of sample collection
Nomenclatural type
NCBI Assembly: GCA_032595675.1
Reference strain
Rat3
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Filamentous bacteria of centimeter length that inhabit the surface of brackish/intertidal sediment and conduct electrons from sulfide-oxidizing cells to oxygen-reducing cells. Gliding motility. Gram-negative, with 15 distinct ridges running longitudinally along the filament. Width of individual cells is 1.2 µm. Can assimilate acetate and propionate; CO2 fixation via the Wood-Ljungdahl pathway. Contains c-type cytochromes, type IV pili (PilA) and Na+antiporters. Polyphosphate and polyglucose storage. Distinguishable by morphology and genome.
Notes
First enrichment from marine estuarine sediment at Rattekaai harbour, Zeeland, The Netherlands; published together with the genome and proposal for valid publication under the SeqCode by Plum-Jensen et al., 2024.
Classification
Bacteria » Desulfobacterota » Desulfobulbia » Desulfobales » Desulfobulbaceae » Electrothrix » Electrothrix rattekaaiensis
Parent
Electrothrix

Genomics

Accession
NCBI Assembly:GCA_032595675.1
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 96.19%
  • Contamination: 0.72%
  • Quality: 92.59
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
57.0 ×
Source
Other features
  • G+C Content: 48.35%
  • Coding Density: 87.17%
  • Codon Table: 11
  • N50: 2,691,434 bp
  • Contigs: 5
  • Largest Contig: 2,691,434 bp
  • Assembly Length: 4,477,327 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Hybrid assembly of Illumina and Nanopore reads, quality check by CheckM2
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Schramm, Andreas 4 months ago
Submitted by
Schramm, Andreas about 2 months ago
Curators
Endorsed by
Palmer, Marike about 1 month ago
Validated by
Palmer, Marike about 1 month ago

Publications
1

Citation Title
Plum-Jensen et al., 2024, Systematic and Applied Microbiology First single-strain enrichments of Electrothrix cable bacteria, description of E. aestuarii sp. nov. and E. rattekaaiensis sp. nov., and proposal of a cable bacteria taxonomy following the rules of the SeqCode
Effective publication



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