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Saccharimonas aalborgensisTs

Citation

Formal styling
Saccharimonas aalborgensisTs Albertsen et al., 2013 (valid 2023)
Proposed by
Albertsen et al., 2013
Status
Valid (SeqCode)
Register List
seqco.de/r:2jgcok0b (validated)
Cannonical URL
https://seqco.de/i:31965

Nomenclature

Rank
Species
Syllabication
aal.borg.en'sis
Etymology
N.L. fem. adj. aalborgensis, pertaining to the city of Aalborg, where the sample containing the organism was obtained
Nomenclatural type
NCBI Assembly: GCF_000392435.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The description is the same as given by Albertsen et al., 2013:
“Candidatus Saccharimonas aalborgensis” has a coccus morphology with a size of ≈0.7 µm in diameter. It has obligate fermentative metabolism, fermenting glucose and other sugars, and produces lactate. It has a monoderm cell envelope and stains Gram-positive.
Classification
Bacteria » Candidatus Patescibacteria » “Saccharimonadia” » “Saccharimonadales” » “Saccharimonadaceae” » Saccharimonas » Saccharimonas aalborgensisTs
Parent
Saccharimonas

Genomics

Accession
NCBI Assembly: GCF_000392435.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.75%
  • Contamination: 0.33%
  • Quality: 98.1
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
890.0 ×
Source
Other features
  • G+C Content: 48.51%
  • Coding Density: 91.09%
  • Codon Table: 11
  • N50: 1,013,781 bp
  • Contigs: 1
  • Assembly Length: 1,013,781 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM2 was used to estimate genome completeness and contamination.

Chklovski, A., Parks, D.H., Woodcroft, B.J. et al. CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning. Nat Methods 20, 1203–1212 (2023). https://doi.org/10.1038/s41592-023-01940-w
Automated checks
Complete

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Masha 5 months ago
Submitted by
Masha 4 months ago
Endorsed by
MarikePalmer 4 months ago
Validated by
MarikePalmer 4 months ago

Publications (1)

Citation Title
Albertsen et al., 2013, Nature Biotechnology Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
Proposed this name


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