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Hydrothermarchaeum profundiTs

Citation

Formal styling
Hydrothermarchaeum profundiTs Chuvochina et al., 2019 (valid 2023)
Effective publication
Chuvochina et al., 2019
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:ivphtsqc (validated)
Cannonical URL
https://seqco.de/i:31421

Nomenclature

Rank
Species
Syllabication
pro.fun'di
Etymology
L. gen. n. profundi, of/from the depth of the sea
Nomenclatural type
NCBI Assembly: GCA_002011125.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The organism was formerly identified as JdFR-18 in the hydrothermal fluid from Juan de Fuca Ridge by Jungbluth et al. (2017) Sci. Data 4, 170037. doi: 10.1038/sdata.2017.37. An annotation of the genome is provided in the same original study. Metabolic capabilities inferred from the genome reveal a thermophilic carboxydotroph capable of chemotaxis and motility. The organism appears to capable of anaerobic respiration with sulfate serving as a terminal electron acceptor.
Classification
Archaea » “Hydrothermarchaeota” » Hydrothermarchaeia » Hydrothermarchaeales » Hydrothermarchaeaceae » Hydrothermarchaeum » Hydrothermarchaeum profundiTs
Parent
Hydrothermarchaeum gtdb

Genomics

Accession
NCBI Assembly:GCA_002011125.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.13%
  • Contamination: 1.8%
  • Quality: 89.13
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
116.9 ×
Source
Other features
  • G+C Content: 39.14%
  • Coding Density: 92.14%
  • Codon Table: 11
  • N50: 149,032 bp
  • Contigs: 22
  • Largest Contig: 364,381 bp
  • Assembly Length: 2,062,134 bp
  • Ambiguous Assembly Fraction: 0.00058%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Chuvochina, Maria 10 months ago
Submitted by
Chuvochina, Maria 8 months ago
Curators
Endorsed by
Palmer, Marike 8 months ago
Validated by
Palmer, Marike 8 months ago

Publications
2

Citation Title
Chuvochina et al., 2019, Systematic and Applied Microbiology The importance of designating type material for uncultured taxa
Effective publication
Jungbluth et al., 2017, Scientific Data Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids


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