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Hydrothermarchaeum profundiTs

Citation

Formal styling
Hydrothermarchaeum profundiTs Chuvochina et al., 2019 (valid 2023)
Proposed by
Chuvochina et al., 2019
Status
Valid (SeqCode)
Register List
seqco.de/r:ivphtsqc (validated)
Cannonical URL
https://seqco.de/i:31421

Nomenclature

Rank
Species
Syllabication
pro.fun'di
Etymology
L. gen. n. profundi, of/from the depth of the sea
Nomenclatural type
NCBI Assembly: GCA_002011125.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The organism was formerly identified as JdFR-18 in the hydrothermal fluid from Juan de Fuca Ridge by Jungbluth et al. (2017) Sci. Data 4, 170037. doi: 10.1038/sdata.2017.37. An annotation of the genome is provided in the same original study. Metabolic capabilities inferred from the genome reveal a thermophilic carboxydotroph capable of chemotaxis and motility. The organism appears to capable of anaerobic respiration with sulfate serving as a terminal electron acceptor.
Classification
Archaea » “Hydrothermarchaeota” » “Hydrothermarchaeia” » “Hydrothermarchaeales” » “Hydrothermarchaeaceae” » Hydrothermarchaeum » Hydrothermarchaeum profundiTs
Parent
Hydrothermarchaeum

Genomics

Accession
NCBI Assembly: GCA_002011125.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.13%
  • Contamination: 1.8%
  • Quality: 89.13
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
116.9 ×
Source
Other features
  • G+C Content: 39.14%
  • Coding Density: 92.14%
  • Codon Table: 11
  • N50: 149,032 bp
  • Contigs: 22
  • Assembly Length: 2,062,134 bp
  • Ambiguous Assembly Fraction: 0.00058%
Automated checks
Complete

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Masha 5 months ago
Submitted by
Masha 3 months ago
Endorsed by
MarikePalmer 3 months ago
Validated by
MarikePalmer 3 months ago

Publications (2)

Citation Title
Chuvochina et al., 2019, Systematic and Applied Microbiology The importance of designating type material for uncultured taxa
Proposed this name
Jungbluth et al., 2017, Scientific Data Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids


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  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license