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Hydrothermus pacificusTs

Citation

Formal styling
Hydrothermus pacificusTs Chuvochina et al., 2019 (valid 2023)
Effective publication
Chuvochina et al., 2019
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:ivphtsqc (validated)
Cannonical URL
https://seqco.de/i:31414

Nomenclature

Rank
Species
Syllabication
pa.ci'fi.cus
Etymology
L. masc. adj. pacificus, peaceful, pertaining to Pacific Ocean
Nomenclatural type
NCBI Assembly: GCA_002011615.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This is one of the first genomic representatives of the EM3 lineage, later known as Candidate bacterial phylum Hydrothermae as proposed by Jungbluth et al. (2017). The MAG of this species has been reconstructed from the deep subsurface biosphere - the Juan de Fuca Ridge subseafloor. 
Classification
Bacteria » “Hydrothermota” » Hydrothermia » Hydrothermales » Hydrothermaceae » Hydrothermus » Hydrothermus pacificusTs
Parent
Hydrothermus gtdb

Genomics

Accession
NCBI Assembly:GCA_002011615.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.53%
  • Contamination: 0.0%
  • Quality: 91.53
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
42.1 ×
Source
Other features
  • G+C Content: 34.75%
  • Coding Density: 95.09%
  • Codon Table: 11
  • N50: 176,033 bp
  • Contigs: 19
  • Largest Contig: 342,452 bp
  • Assembly Length: 2,059,798 bp
  • Ambiguous Assembly Fraction: 0.0018%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Chuvochina, Maria 10 months ago
Submitted by
Chuvochina, Maria 8 months ago
Curators
Endorsed by
Palmer, Marike 8 months ago
Validated by
Palmer, Marike 8 months ago

Publications
2

Citation Title
Chuvochina et al., 2019, Systematic and Applied Microbiology The importance of designating type material for uncultured taxa
Effective publication
Jungbluth et al., 2017, Scientific Data Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids


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