Pantoea multigeneris


Citation

Formal styling
Pantoea multigeneris Crosby et al., 2023
Proposed by
Crosby et al., 2023
Status
Valid (SeqCode)
Register List
seqco.de/r:xfaladud (validated)
Cannonical URL
https://seqco.de/i:31368

Nomenclature

Rank
Species
Syllabication
mul.ti.ge.ne'ris
Etymology
L. fem. adj. multigeneris, multifarious, of different kinds or varied, referring to the varied sources of isolation of this organism
Nomenclatural type
NCBI Assembly: GCF_011752615.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species consists of the genomes of two strains, A4 and Acro-835, which have a pairwise ANI of approximately 96%, likely indicating higher genomic diversity within this species. Strain A4 was isolated from a decaying flower bud in Malaysia while strain Acro-835 was isolated from an ant (Acromyrmex) fungus garden in Brazil. This species splits off at a basal node within the Pantoea phylogeny, with lower than 80% ANI to the genomes of the closest known relatives. The nomenclatural type for the species is the genome of Acro-835Ts, available under the GenBank assembly accession number GCF_011752615.1.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea multigeneris
Parent
Pantoea

Genomics

Accession
NCBI Assembly: GCF_011752615.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.7%
  • Contamination: 2.37%
  • Quality: 86.85
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
75.0 ×
Source
Other features
  • G+C Content: 52.83%
  • Coding Density: 87.86%
  • Codon Table: 11
  • N50: 418,101 bp
  • Contigs: 48
  • Assembly Length: 5,419,927 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
MarikePalmer 6 months ago
Submitted by
MarikePalmer 5 months ago
Endorsed by
Masha 4 months ago
Validated by
miguel about 16 hours ago

Publications (1)

Citation Title
Crosby et al., 2023, Frontiers in Microbiology Genomic delineation and description of species and within-species lineages in the genus Pantoea
Proposed this name



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