Pantoea communis

Citation

Formal styling

Pantoea communis Crosby et al., 2023

Effective publication

Crosby et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:xfaladud (validated)

Cannonical URL

https://seqco.de/i:31366

Nomenclature

Rank

Species

Syllabication

com.mu'nis

Etymology

L. fem. adj. communis, common or widespread, referring to the broad global distribution of members of this species

Nomenclatural type

NCBI Assembly: GCF_011752685.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

This species consists of seven genome-sequenced strains. The genomes are monophyletic with phylogenomic analyses. This clade shares an ancestor with the genomes of the GTDB species "Pantoea rwandensis_B". The minimal pairwise ANI among the seven genomes is as low as 97%. ANI between the seven genomes and and the closest relative is approximately 94%, showing that the two clades represent two different, but closely related, species. Isolation sources include insects, like stink bugs (Plautia stali, Sibaria englemani, Taurocerus sp.), and an ant (Atta laevigata) fungus garden, as well as plants (Garcinia morella) and other environmental sources. Overall, this species shares plants and insects as isolation sources with many other Pantoea species, and no adaptation to any specific environment is evident.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea communis

Parent

Pantoea ncbi

Genomics

Accession

NCBI Assembly:GCF_011752685.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 1.58%
• Quality: 92.1

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 2 23S rRNAs (up to 42.0%)
• tRNAs for 20 amino acids

Sequencing depth

108.0 ×

Source

• BioSample: SAMN12703575

Other features

• G+C Content: 53.67%
• Coding Density: 87.14%
• Codon Table: 11
• N50: 233,234 bp
• Contigs: 88
• Largest Contig: 795,707 bp
• Assembly Length: 5,857,934 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• NCBI Taxonomy: 2608354
• GTDB Genome: GCF_011752685.1
• Global Biodiversity Information Facility (GBIF)

Search sequences

• NCBI Nucleotide
• NCBI Genomes

Local history

• This name was last modified 3 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Palmer, Marike 11 months ago

Submitted by

Palmer, Marike 9 months ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria 9 months ago

Validated by

Rodriguez-R, Luis M 5 months ago