JSONPDF

Pantoea astica

Citation

Formal styling
Pantoea astica Crosby et al., 2023
Effective publication
Crosby et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xfaladud (validated)
Cannonical URL
https://seqco.de/i:31358

Nomenclature

Rank
Species
Syllabication
as.ti'ca
Etymology
N.L. fem. adj. astica, of a city (from Gr. masc. adj. astikós, of a city) referring to the recovery of this organism from New York City, NY, USA
Nomenclatural type
NCBI Assembly: GCA_002434205.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species consists of a single MAG, UBA6564, which was assembled from a metal surface in New York City. P. conspicua is the most closely related known species, and the ANI between P. astica UBA6564 and the P. conspicua type strain is below 95% confirming that this genome represents a separate species.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea astica
Parent
Pantoea

Genomics

Accession
NCBI Assembly:GCA_002434205.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.92%
  • Contamination: 0.58%
  • Quality: 97.02
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 17 amino acids
Sequencing depth
21.64 ×
Source
Other features
  • G+C Content: 56.14%
  • Coding Density: 87.07%
  • Codon Table: 11
  • N50: 210,842 bp
  • Contigs: 42
  • Largest Contig: 376,525 bp
  • Assembly Length: 4,491,069 bp
  • Ambiguous Assembly Fraction: 0.08%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike 11 months ago
Submitted by
Palmer, Marike 9 months ago
Curators
Endorsed by
Chuvochina, Maria 9 months ago
Validated by
Rodriguez-R, Luis M 5 months ago

Publications
1

Citation Title
Crosby et al., 2023, Frontiers in Microbiology Genomic delineation and description of species and within-species lineages in the genus Pantoea
Effective publication


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license