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Doriopsillibacter californiensisTs

Citation

Formal styling
Doriopsillibacter californiensisTs Džunková et al., 2023 (valid 2024)
Effective publication
Džunková et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:td4s-yi2 (validated)
Cannonical URL
https://seqco.de/i:31268

Nomenclature

Rank
Species
Syllabication
ca.li.for.ni.en'sis
Etymology
N.L. masc. adj. californiensis, coming from California
Nomenclatural type
NCBI Assembly: GCA_030386295.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Doriopsillibacter californiensis (indicating host name and collection location). Belonging to Persebacteraceae, Tethybacterales, Gammaproteobacteria. The whole genome-based phylogenies enabled the assignment of the Doriopsillibacter genus. Symbiont of nudibranch Doriopsilla fulva (Dendrodorididae, Nudibranchia) collected from a tide pool at Pillar Point, California, USA (37º 29ʹ 41.427″ N, 122º 29ʹ 57.994″ W), discovered by synthase-selected single-cell genomics. Mucus-producing goblet cells of Doriopsilla fulva appear to be the primary reservoir of D. californiensis. Genome sequence available at NCBI with BioProject ID: PRJNA864331.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Tethybacterales » Perseibacteraceae » Doriopsillibacter » Doriopsillibacter californiensisTs
Parent
Doriopsillibacter

Genomics

Accession
NCBI Assembly:GCA_030386295.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 94.12%
  • Contamination: 0.84%
  • Quality: 89.92
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
395.0 ×
Source
Other features
  • G+C Content: 46.79%
  • Coding Density: 91.32%
  • Codon Table: 11
  • N50: 455,906 bp
  • Contigs: 5
  • Largest Contig: 621,832 bp
  • Assembly Length: 1,532,643 bp
  • Ambiguous Assembly Fraction: 0.0065%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Dzunkova, Maria about 1 year ago
Submitted by
Dzunkova, Maria 8 days ago
Curators
Validated by
Palmer, Marike 5 days ago

Publications
1

Citation Title
Džunková et al., 2023, Microbiome Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium
Effective publication


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