Pseudomonas phytovorans


Citation

Formal styling
Pseudomonas phytovorans Díaz-García et al., 2024
Proposed in
Díaz-García et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:-kiq_w89 (validated)
Cannonical URL
https://seqco.de/i:24109

Nomenclature

Rank
Species
Syllabication
phy.to.vo'rans.
Etymology
Gr. neut. n. phyton, plant; L. pres. part. vorans, devouring, destroying; N.L. fem. part. adj. phytovorans, plant-devouring
Nomenclatural type
INSDC Nucleotide: CP119325
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
A genus established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_876. Genomic metrics include ANI (92.18), AAI (95) and dDDH d4 (47). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 87 CAZymes, 16 of them involved in lignocellulose degradation. In addition, putative genes for PUR hydrolysis were found within the MAG.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Moraxellales » Pseudomonadaceae » Pseudomonas » Pseudomonas phytovorans
Parent
Pseudomonas

Genomics

Accession
INSDC Nucleotide:CP119325
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.36%
  • Contamination: 3.06%
  • Quality: 84.06
Ribosomal and transfer RNA genes
  • 7 16S rRNAs (up to 100.0%)
  • 7 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
20.0 ×
Source
Other features
  • G+C Content: 62.0%
  • Coding Density: 89.22%
  • Codon Table: 11
  • N50: 6,226,488 bp
  • Contigs: 1
  • Largest Contig: 6,226,488bp
  • Assembly Length: 6,226,488 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Dfast was used to identify rRNA genes. Completion and contamination were estimated by CheckM.
Automated checks
Complete
See additional details

Metadata

Search sequences
Local history
Registered by
Díaz-García, Laura 11 months ago
Submitted by
Díaz-García, Laura 10 months ago
Curators
Endorsed by
Palmer, Marike 8 months ago
Validated by
Palmer, Marike 29 days ago

Publications
1

Citation Title
Díaz-García et al., 2024, Systematic and Applied Microbiology Andean soil-derived lignocellulolytic bacterial consortium as a source of novel taxa and putative plastic-active enzymes
Proposed this name



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