Palauibacter soopunensis^Ts

Citation

Formal styling

Palauibacter soopunensis^Ts Aldeguer-Riquelme et al., 2023

Proposed by

Aldeguer-Riquelme et al., 2023

Status

Valid (SeqCode)

Register List

seqco.de/r:0hkazsoc (validated)

Cannonical URL

https://seqco.de/i:23788

Nomenclature

Rank

Species

Syllabication

soo.pu.nen'sis

Etymology

N.L. masc. n. soopunensis, from Soopun, the aboriginal name of Esk island, where the genome was recovered

Nomenclatural type

NCBI Assembly: GCA_947581735

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Classification

Bacteria » “Gemmatimonadetes (phylum)” » Gemmatimonadetes » Palauibacterales » Palauibacteraceae » Palauibacter » Palauibacter soopunensis^Ts

Parent

Palauibacter

Genomics

Accession

NCBI Assembly: GCA_947581735

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.54%
• Contamination: 3.3%
• Quality: 79.04

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 53.0%)
• 1 23S rRNA (up to 63.0%)
• tRNAs for 21 amino acids

Source

• SRA: SRR10996926

Other features

• G+C Content: 69.01%
• Coding Density: 93.45%
• Codon Table: 11
• N50: 213,500 bp
• Contigs: 54
• Assembly Length: 3,475,617 bp
• Ambiguous Assembly Fraction: 0.00029%

Submitter comments

 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 

Automated checks

Complete

Metadata

Outside links and data sources

• GTDB Genome: GCA_947581735
• Global Biodiversity Information Facility (GBIF)

Search sequences

• NCBI Nucleotide

Local history

• This name was last modified 4 months ago
• Current workflow status

Registered by

BorjaAldeguer about 1 year ago

Submitted by

BorjaAldeguer 10 months ago

Endorsed by

Masha 7 months ago

Validated by

Masha 4 months ago