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Candidatus Hydrogenosomobacter endosymbioticus

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Citation

Formal styling
“Candidatus Hydrogenosomobacter endosymbioticus” Takeshita et al., 2019
Effective publication
Takeshita et al., 2019
SeqCode status
Automated discovery
Cannonical URL
https://seqco.de/i:23415

Nomenclature

Rank
Species
Syllabication
en.do.sym.bi.o.ti'cus
Etymology
Gr. pref. endo-, within; N.L. adj. symbioticus, from the Greek biōtikos, living together; N.L. adj. endosymbioticus, living symbiotically within [another organism]
Nomenclatural type
INSDC Nucleotide: AP025225

Taxonomy

Description
It is a short rod, 1.2 to 1.5 μm long and 0.4 to 0.8 μm wide. It lives in the cytoplasm, neighboring hydrogenosomes, of an anaerobic scuticociliate strain, GW7. Cultivation without the host ciliate is not possible so far. The host ciliate is maintained in the laboratory of Naoya Shinzato, University of the Ryukyus, Japan. Probe GW7Bac2 (5′-CTCTGTTTCCAGAGCCCTCGAT-3′) is available for specific detection of this species by FISH. It is the type species of the genus.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Holosporales » “Holosporaceae” » Candidatus Hydrogenosomobacter » Candidatus Hydrogenosomobacter endosymbioticus
Parent
Candidatus Hydrogenosomobacter gtdb

Genomics

Accession
INSDC Nucleotide:AP025225
Estimated Quality Metrics
  • Completeness: 94.3%
  • Contamination: 0.9%
  • Quality: 89.8
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Other features
  • G+C Content: 41.28%
  • Coding Density: 85.67%
  • Codon Table: 11
  • N50: 826,669 bp
  • Contigs: 1
  • Largest Contig: 826,669 bp
  • Assembly Length: 826,669 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Rodriguez-R, Luis M about 2 years ago

Publications
2

Citation Title
Shiohama et al., 2022, Microbiology Resource Announcements Complete Genome Sequence of “ Candidatus Hydrogeosomobacter endosymbioticus,” an Intracellular Bacterial Symbiont of the Anaerobic Ciliate Scuticociliate GW7
Takeshita et al., 2019, Applied and Environmental Microbiology Tripartite Symbiosis of an Anaerobic Scuticociliate with Two Hydrogenosome-Associated Endosymbionts, a Holospora -Related Alphaproteobacterium and a Methanogenic Archaeon
Effective publication


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