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cognitis nomina
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Genome sc|0000057
Name
Sulfuritelmatomonas gaucii
Ts
Database
NCBI Assembly
Accession
GCA_900290245.1
Genomics
Accession
NCBI Assembly:
GCA_900290245.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
91.5%
Contamination:
2.8%
Quality:
77.5
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 17 amino acids
Source
BioSample: SAMN07714389
Other features
G+C Content:
59.43%
Coding Density:
86.36%
Codon Table:
11
N50:
79,929 bp
Contigs:
162
Largest Contig:
269,762 bp
Assembly Length:
5,286,421 bp
Ambiguous Assembly Fraction:
0.016%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2010-09-21
Location
Lat Lon:
50.131881 N 11.881046 E
Toponym
Geo Loc Name:
Germany: Schloeppnerbrunnen fen II, Fichtel Mountains, northeastern Bavaria
Environment
Env Material:
peat soil
Env Biome:
fen
Other
Ph:
5-Apr
Depth:
0.1-0.2 m
Rel To Oxygen:
anaerobe
Package
Ncbi Submission Package:
MIGS.ba.soil.5.0
All retrieved samples
SAMN07714389
: Peat soil acidobacterial MAG SbA5
Metadata retrieved
4 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN07714389
×
Keywords: GSC:MIxS;MIGS:5.0
isol_growth_condt
metagenome-assembled genome (MAG)
ref_biomaterial
27015005
rel_to_oxygen
anaerobe
MIMAG_mag_coverage_software
other
collection date
2010-09-21
geo loc name
Germany: Schloeppnerbrunnen fen II, Fichtel Mountains, northeastern Bavaria
MIMAG_annotation
MicroScope MaGe platform
MIMAG_taxa_id
multi marker approach
lat lon
50.131881 N 11.881046 E
env_material
peat soil
MIMAG_bin_parameters
homology search+kmer+coverage
MIMAG_assembly_quaility
Medium Quality Draft
MIMAG_contamination_score
High Quality Draft
env feature
long-term experimental site
strain
Peat soil MAG SbA5
MIMAG_analysis_project_typ
metagenome-assembled genome (MAG)
INSDC secondary accession
ERS2227380
water_content_soil
0.78 g/g
MIMAG_completeness_software
checkm
MIMAG_reassembly_post_binning
no
NCBI submission package
MIGS.ba.soil.5.0
depth
0.1-0.2 m
elev
713 m
ph
5-Apr
MIMAG_completeness_score
High Quality Draft
env biome
fen
MIMAG_assembly_software
CLC Genomics Workbench 5.5.1 (CLC Bio)
MIMAG_binning_software
other
ENA-FIRST-PUBLIC
2017-09-28
ENA-LAST-UPDATE
2021-02-28
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