JSON

Genome sc|0000471

Name

Amphritriteisimkania amoebophyraeTs

Database

NCBI Assembly

Accession

GCA_030408475.1

Genomics

Accession
NCBI Assembly:GCA_030408475.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.55%
  • Contamination: 0.0%
  • Quality: 91.55
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
158.0 ×
Source
Other features
  • G+C Content: 36.81%
  • Coding Density: 91.04%
  • Codon Table: 11
  • N50: 42,111 bp
  • Contigs: 71
  • Largest Contig: 203,538 bp
  • Assembly Length: 1,800,129 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM was used to assess the completeness and contamination of the genome. 
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2003
Location
Not detected
Toponym
Geo Loc Name: USA
Environment
Sample Type: cell culture
Isolation Source: salt pond
Other
Host: Alexandrium fundyense
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 4 months ago


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