JSON

Genome sc|0000018

Name

Macondimonas diazotrophicaTs

Database

NCBI Assembly

Accession

GCF_004684205.1

Genomics

Accession
NCBI Assembly:GCF_004684205.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 96.8%
  • Contamination: 1.15%
  • Quality: 91.05
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
90.0 ×
Source
Other features
  • G+C Content: 61.57%
  • Coding Density: 90.75%
  • Codon Table: 11
  • N50: 178,425 bp
  • Contigs: 94
  • Largest Contig: 315,069 bp
  • Assembly Length: 2,800,882 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2010-10-20
Location
Lat Lon: 30.32 N 87.17 W
Toponym
Geo Loc Name: USA: Pensacola Municipal Beach, FL
Environment
Env Material: Oil contaminated soil (beach sands affected by the Deepwater Horizon oil spill)
Env Biome: Sandy beach
Isolation Source: beach sand contaminated with Macondo oil
Env Broad Scale: ENVO:00002875
Env Local Scale: ENVO:00000316 | ENVO:00002875
Env Medium: ENVO:00002875 | ENVO:0000213
Other
Depth: 20-30 cm
Package
Ncbi Submission Package: MIGS.ba.sediment.5.0
Biosamplemodel: MIGS/MIMS/MIMARKS.sediment
All retrieved samples
Metadata retrieved 4 months ago


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