Genome sc|0001479

Genomics

Accession

NCBI Assembly:GCA_942491045.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.01%
• Contamination: 3.55%
• Quality: 72.26

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 18 amino acids

Sequencing depth

619.0 ×

Source

• BioSample: SAMEA14373206
• BioSample: ERS11891750
• BioSample: ERS11891751

Other features

• G+C Content: 47.53%
• Coding Density: 86.21%
• Codon Table: 11
• N50: 899,093 bp
• Contigs: 9
• Largest Contig: 1,305,763 bp
• Assembly Length: 4,029,898 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

medium-quality MAG from hybrid assembly (9 contigs) of Illumina and Nanopore reads. Quality check by CheckM2.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2021

Location

Not detected

Toponym

Geographic Location Country And Or Sea: Denmark

Environment

Isolation Source: Marine sediment

Environment Biome: aquatic biome

Environment Feature: marine

Other

Not detected

Package

Ena Checklist: ERC000011

All retrieved samples

• SAMEA14373206: Medium-quality MAG for unclassified Candidatus Electrothrix (taxid:2637969)
• ERS11891750: Nanopore reads for marine sediment sample from Hou, Denmark
• ERS11891751: Illumina reads for marine sediment sample from Hou, Denmark

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Metadata retrieved 4 months ago