Genome sc|0001478

Genomics

Accession

NCBI Assembly:GCA_942493095.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.35%
• Contamination: 1.53%
• Quality: 86.7

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

26.0 ×

Source

• BioSample: SAMEA14373291
• BioSample: ERS11891752
• BioSample: ERS11891753

Other features

• G+C Content: 54.79%
• Coding Density: 89.76%
• Codon Table: 11
• N50: 3,199,950 bp
• Contigs: 1
• Largest Contig: 3,199,950 bp
• Assembly Length: 3,199,950 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

circular genome from hybrid assembly (Illumina & nanopore), still CheckM2 claims 94.35% completeness.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2021

Location

Not detected

Toponym

Geographic Location Country And Or Sea: Denmark

Environment

Isolation Source: Brackish water sediment

Environment Biome: aquatic biome

Environment Feature: brackish

Other

Not detected

Package

Ena Checklist: ERC000011

All retrieved samples

• SAMEA14373291: Circular MAG for unclassified Candidatus Electronema (taxid:2677064)
• ERS11891752: Nanopore reads for brackish-water sediment sample from Logten, Denmark
• ERS11891753: Illumina reads for brackish-water sediment sample from Logten, Denmark

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Metadata retrieved 4 months ago