Genome sc|0001478


Database

NCBI Assembly

Accession

GCA_942493095.1

Genomics

Accession
NCBI Assembly:GCA_942493095.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.35%
  • Contamination: 1.53%
  • Quality: 86.7
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
26.0 ×
Source
Other features
  • G+C Content: 54.79%
  • Coding Density: 89.76%
  • Codon Table: 11
  • N50: 3,199,950 bp
  • Contigs: 1
  • Largest Contig: 3,199,950 bp
  • Assembly Length: 3,199,950 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
circular genome from hybrid assembly (Illumina & nanopore), still CheckM2 claims 94.35% completeness.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2021
Location
Not detected
Toponym
Geographic Location Country And Or Sea: Denmark
Environment
Isolation Source: Brackish water sediment
Environment Biome: aquatic biome
Environment Feature: brackish
Other
Not detected
Package
Ena Checklist: ERC000011
All retrieved samples

Metadata retrieved 3 months ago


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