Genome sc|0001477

Genomics

Accession

NCBI Assembly:GCA_022766165.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.04%
• Contamination: 1.54%
• Quality: 86.34

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

83.0 ×

Source

• BioSample: SAMN09811632
• BioSample: SAMN09011260

Other features

• G+C Content: 46.21%
• Coding Density: 88.16%
• Codon Table: 11
• N50: 42,968 bp
• Contigs: 162
• Largest Contig: 161,489 bp
• Assembly Length: 3,590,544 bp
• Ambiguous Assembly Fraction: 2.8e-05%

Submitter comments

Illumina sequencing of DNA from 5 single filaments after WGA.
Since these 5 genomes were 99.85% identical (ANI) and came from the same marine sediment enrichment, they were co-assembled. Quality checks were by CheckM2.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2014

Location

Lat Lon: 51.2621 N 4.1011 E

Toponym

Geo Loc Name: Netherlands: Rattekaai Salt Marsh

Environment

Sample Type: metagenomic assembly

Isolation Source: marine sediment

Other

Not detected

Package

Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0

Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental

All retrieved samples

• SAMN09811632: Candidatus Electrothrix sp. AU1_5
• SAMN09011260: AU metagenome

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Metadata retrieved 4 months ago