Genome sc|0001477


Database

NCBI Assembly

Accession

GCA_022766165.1

Genomics

Accession
NCBI Assembly:GCA_022766165.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.04%
  • Contamination: 1.54%
  • Quality: 86.34
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
83.0 ×
Source
Other features
  • G+C Content: 46.21%
  • Coding Density: 88.16%
  • Codon Table: 11
  • N50: 42,968 bp
  • Contigs: 162
  • Largest Contig: 161,489 bp
  • Assembly Length: 3,590,544 bp
  • Ambiguous Assembly Fraction: 2.8e-05%
Submitter comments
Illumina sequencing of DNA from 5 single filaments after WGA.
Since these 5 genomes were 99.85% identical (ANI) and came from the same marine sediment enrichment, they were co-assembled. Quality checks were by CheckM2.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2014
Location
Lat Lon: 51.2621 N 4.1011 E
Toponym
Geo Loc Name: Netherlands: Rattekaai Salt Marsh
Environment
Sample Type: metagenomic assembly
Isolation Source: marine sediment
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples

Metadata retrieved 3 months ago


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